Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00994
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 29 0.64
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 2.0
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 3.4
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.5
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 4.5
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 6.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 6.0
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 26 6.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 6.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 6.0
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 29.1 bits (62), Expect = 0.64
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 323 YTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWFNTSKMIVFLHVNPI 472
YT P L CD+G+K T I F +IL ++ + I FL V+PI
Sbjct: 150 YTYP--LACDKGKKTLSTSIAIEFFQILLKDTFPLLD--DWIAFLKVSPI 195
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 291 IYQNLNMVRPSTHYPTFYFATEERKRI 371
I+ L +V+PS +P FY +EE+ +I
Sbjct: 1450 IHYVLKLVKPSKFFPLFYSDSEEKGKI 1476
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 544 KIVSLATKGTRYEVVNELFTS-HPNIIFGQPENAAKMFKIL 663
+I +A +G ++ ++ L H NII+G PE K I+
Sbjct: 59 QIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNII 99
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 624 EYNIWM*GKQFIDNFVACSFC 562
E+N W+ + F+D + C FC
Sbjct: 200 EFNSWLVFRHFVDLILMCDFC 220
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 146 STTTKTENVIIKKNSFRASSMFSHSKEVSREN 241
ST TEN ++KN+F+ + F+ + ++ N
Sbjct: 106 STRKDTENESLRKNNFKRRTQFAFTGRATKSN 137
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 447 IILDVLNHSKHSLAKILSKGLSISVLFFFSPLSQ----SKKSGNVYLGGPYLGFDR 292
+I +L + S K+ K + VL L + +K SGN+YLGG + G R
Sbjct: 3 LICSILPKKEPSYLKLWRKQVIYQVLTDRFALDEDNFYAKASGNLYLGGTWKGITR 58
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 436 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 436 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +1
Query: 544 KIVSLATKGTRYEVVNELFTSHPNIIFGQPENAAKMFKILKKAPQLVVMAGV 699
K++S KGTR+EV + + T I++ + A + K + +A L+++ V
Sbjct: 283 KVLSATWKGTRFEVQSVIRTVSDKILY---DKAVPLEKRINRANALLMIGQV 331
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 436 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 436 CIKPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CI S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,271
Number of Sequences: 5004
Number of extensions: 67191
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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