Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00994
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)                   33   0.30 
SB_11931| Best HMM Match : Ion_trans (HMM E-Value=0)                   31   0.90 
SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_3384| Best HMM Match : K_tetra (HMM E-Value=0.003)                  29   4.8  
SB_55164| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_50723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)                    28   8.4  

>SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)
          Length = 626

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +3

Query: 159 KLRMSSLK-KILLEPRACLVTAKRFRGKINIQRQGCLISNGSYYLIYQNLNMVRPSTHYP 335
           ++R  SL  K+  +P   L+TA+    K+ +   G   SNG      ++ N+ R +T   
Sbjct: 131 RVRQFSLNMKVTSDPEEALITAE----KLGVD--GFTASNGWLQCFKEHYNLQRMATAGE 184

Query: 336 TFYFATEERKRIKQKLTIPSKGFWPENVWN 425
               ++E  +   +++   ++G+ PENVWN
Sbjct: 185 DGDVSSETLESWNERVREITRGWKPENVWN 214


>SB_11931| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 475

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 463 KPNNNGGQDASLRCL-NKNKMYLRTYGKKIVSLATKGTRYEVVNELFTSHPNIIFGQPEN 639
           K N+ G  D+S +   + N   +R + ++ V+L   G RY+   E     P  + G P  
Sbjct: 58  KSNDPGWSDSSSKGFPDANSNKIRAHKRRRVTLNVSGFRYQTYVETLDKFPTTLLGDPAK 117

Query: 640 AAKMF 654
             + F
Sbjct: 118 RREYF 122


>SB_55598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 668

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
 Frame = -3

Query: 506 RQRKLASCPPLLLGLHVRTQSFWMY*T------IPNILWPKSFR 393
           R R++   PP  + LH+   S W+Y T         + WP++FR
Sbjct: 151 RPRRIIYSPPGAISLHIPGNSHWLYETPRSDVVFTLLFWPRAFR 194


>SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 413 LWPKSFRRDCQFLFYSFSLLCRKV 342
           +W   +   C ++ YSFSL+CRKV
Sbjct: 69  IWIVIYTWQCLWIVYSFSLICRKV 92


>SB_8257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 526 LRTYGKKIVSLATKGTRYEVVNELFTSHPNIIFGQPE 636
           +  Y +  V++   G RYE   E  +++P  + G PE
Sbjct: 284 IAAYRRPRVTINVSGMRYETHEETLSNYPETLLGSPE 320


>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = -3

Query: 527 KYILFLLRQRKLASCPPLLLGLHVRTQSFWMY*TIPNILWPKSFRRDC 384
           +Y++ L++  K    P ++   H++   FW    +  I W +S    C
Sbjct: 140 RYLIVLMKMLKKHYLPDVICSYHLKNLLFWECENMEEIFWRESTSAKC 187


>SB_3384| Best HMM Match : K_tetra (HMM E-Value=0.003)
          Length = 395

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 550 VSLATKGTRYEVVNELFTSHPNIIFGQ 630
           ++L    TR+ V   LFT+HPN + G+
Sbjct: 103 LTLVVDNTRFVVDRSLFTAHPNTMMGR 129


>SB_55164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 532 TYGKKIVSLATKGTRYEVVNELFTSHPNIIF 624
           TY  K  +L     RY+V  E++ S P  +F
Sbjct: 34  TYSNKYNNLVVMNIRYQVEEEVYASSPEYVF 64


>SB_50723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 574 RYEVVNELFTSHPNIIFGQPENAAKMFKILKKAPQLVV 687
           RY++       HP +I G  E A  +F + K  P LVV
Sbjct: 68  RYQIAEPQLYQHPPLIIGITEQAGDLFTLSK--PSLVV 103


>SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)
          Length = 349

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 350 DRGEKKNKTEIDNPFERILARECLEW 427
           D G+K+   E+   FE +L R+CL+W
Sbjct: 199 DEGKKEESLEL--AFEYLLTRDCLQW 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,703,864
Number of Sequences: 59808
Number of extensions: 442249
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)