Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00993
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 29 0.44
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 28 1.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 28 1.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 28 1.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 28 1.0
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 1.8
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 27 3.1
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 26 4.1
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.1
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 25 9.5
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 25 9.5
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 9.5
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 323 YTLPDFLLCDRGEKKNKTEIDNPFERILARECLEWVNTSKMIVFLHVNPI 472
YT P L CD+G+K T I F +IL ++ ++ I FL V+PI
Sbjct: 150 YTYP--LACDKGKKTLSTSIAIEFFQILLKDTFPLLD--DWIAFLKVSPI 195
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 436 CINPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CIN S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 436 CINPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CIN S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 436 CINPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CIN S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 436 CINPFQTFSGQNPFEGIVNFCFILFLSSVA 347
CIN S Q+ +G +NF +IL++ SVA
Sbjct: 98 CINMLCFLSSQSSPQGWINFLYILWIFSVA 127
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 291 IYQNLNMVRPSTHYPTFYFATEERKRI 371
I+ L +V+PS +P FY +EE+ +I
Sbjct: 1450 IHYVLKLVKPSKFFPLFYSDSEEKGKI 1476
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 447 IILDVLTHSKHSLAKILSKGLSISVLFFFSPLSQ----SKKSGNVYLGGPYLGFDR 292
+I +L + S K+ K + VL L + +K SGN+YLGG + G R
Sbjct: 3 LICSILPKKEPSYLKLWRKQVIYQVLTDRFALDEDNFYAKASGNLYLGGTWKGITR 58
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 374 TEIDNPFERILARECLEWVNTSKMIVFLHVNPITME 481
T + +PF ++E E + S++I VNP+T+E
Sbjct: 109 TLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLE 144
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 146 STTTKTENVIIKKNSFRASSMFSHSKEVSREN 241
ST TEN ++KN+F+ + F+ + ++ N
Sbjct: 106 STRKDTENESLRKNNFKRRTQFAFTGRATKSN 137
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 194 RASSMFSHSKEVSRENKYSKARLPHFERQLLLDLSKPKYGPPKYTL 331
++S FS + R + K ++ R+ L+ +K KY PKY L
Sbjct: 8 KSSPYFSRYQTKYRRRREGKT--DYYARKRLIAQAKNKYNAPKYRL 51
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 194 RASSMFSHSKEVSRENKYSKARLPHFERQLLLDLSKPKYGPPKYTL 331
++S FS + R + K ++ R+ L+ +K KY PKY L
Sbjct: 8 KSSPYFSRYQTKYRRRREGKT--DYYARKRLIAQAKNKYNAPKYRL 51
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.0 bits (52), Expect = 9.5
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = +2
Query: 113 NNYPLIQYQPTSTTTKTENVIIKKNSFRASSMFSHSKEVSRENKYSKARLPHFERQLLLD 292
+N IQY T ++ I+ N F + + S SK S E +S H + +
Sbjct: 492 SNGKSIQYYSTLFVRLIQSCSIQ-NLFDSEIVQSESK--STEALHSGNLTEHLKTVESI- 547
Query: 293 LSKPKYGPPKYTLPDFL---LCDRGEKKNKTEIDNPFERILARECLE 424
LSK ++ +Y + + + L R K+NKTE DN F IL + LE
Sbjct: 548 LSKSRH--EEYRIANHIVAYLLSRSLKQNKTESDNSF-AILTKILLE 591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,939
Number of Sequences: 5004
Number of extensions: 61241
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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