Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00993
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)                   33   0.27 
SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)                    29   3.3  
SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)                 28   7.6  

>SB_16187| Best HMM Match : DDE (HMM E-Value=1.7e-31)
          Length = 626

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +3

Query: 159 KLRMSSLK-KILLEPRACLVTAKRFRGKINIQRQGCLISNGSYYLIYQNLNMVRPSTHYP 335
           ++R  SL  K+  +P   L+TA+    K+ +   G   SNG      ++ N+ R +T   
Sbjct: 131 RVRQFSLNMKVTSDPEEALITAE----KLGVD--GFTASNGWLQCFKEHYNLQRMATAGE 184

Query: 336 TFYFATEERKRIKQKLTIPSKGFWPENVWN 425
               ++E  +   +++   ++G+ PENVWN
Sbjct: 185 DGDVSSETLESWNERVREITRGWKPENVWN 214


>SB_36523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 413 LWPKSFRRDCQFLFYSFSLLCRKV 342
           +W   +   C ++ YSFSL+CRKV
Sbjct: 69  IWIVIYTWQCLWIVYSFSLICRKV 92


>SB_39964| Best HMM Match : RA (HMM E-Value=0.00072)
          Length = 349

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 350 DRGEKKNKTEIDNPFERILARECLEWV 430
           D G+K+   E+   FE +L R+CL+W+
Sbjct: 199 DEGKKEESLEL--AFEYLLTRDCLQWI 223


>SB_10159| Best HMM Match : Apo-VLDL-II (HMM E-Value=2)
          Length = 638

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 389 PFERILARECLEWVNTSKMIVFLHVNPITMEDKTPVYAALI 511
           PF  +  +E ++ V+  KMI+   VN +TMED+  V   LI
Sbjct: 253 PFLDMFQKESIK-VDACKMIMEAFVNALTMEDERRVIGNLI 292


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,937,095
Number of Sequences: 59808
Number of extensions: 411521
Number of successful extensions: 905
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)