Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00992
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 108 7e-25
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 107 1e-24
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 33 0.023
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 29 0.38
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 28 0.88
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.0
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 3.5
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 4.7
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.2
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 8.2
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.2
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 108 bits (259), Expect = 7e-25
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = +1
Query: 256 YKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 435
YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KDE+IIEGN
Sbjct: 88 YKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGN 147
Query: 436 SLEDVSSSAALIQQSTTVKNRDIR 507
SLE+VS SAA I+Q V+N+DIR
Sbjct: 148 SLENVSQSAANIKQICNVRNKDIR 171
Score = 81.8 bits (193), Expect = 7e-17
Identities = 39/99 (39%), Positives = 63/99 (63%)
Frame = +2
Query: 5 IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 184
I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS+K
Sbjct: 5 IYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGSRK 63
Query: 185 ELAAVRTVCSHVENMIKGVTKGFHTRCVLCMLTSPLTVS 301
A +RT S + NMI GVT+GF + L P+ ++
Sbjct: 64 HNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININ 102
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 504 QKFLDGLYVSEKTTV 548
+KFLDG+YVSE+ +
Sbjct: 171 RKFLDGIYVSERGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 107 bits (257), Expect = 1e-24
Identities = 52/84 (61%), Positives = 63/84 (75%)
Frame = +1
Query: 256 YKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 435
YKMR VYAHFPIN TE +++EIRNFLGE+ R +K PGVTV S KDE+I+EGN
Sbjct: 88 YKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGN 147
Query: 436 SLEDVSSSAALIQQSTTVKNRDIR 507
SLE+VS SAA I+Q V+N+DIR
Sbjct: 148 SLENVSQSAANIKQICNVRNKDIR 171
Score = 78.2 bits (184), Expect = 8e-16
Identities = 38/99 (38%), Positives = 61/99 (61%)
Frame = +2
Query: 5 IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 184
I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS+K
Sbjct: 5 IYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGSRK 63
Query: 185 ELAAVRTVCSHVENMIKGVTKGFHTRCVLCMLTSPLTVS 301
A +R+V S + NMI GVT+GF + L P+ ++
Sbjct: 64 HNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININ 102
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 504 QKFLDGLYVSEKTTV 548
+KFLDG+YVSE+ +
Sbjct: 171 RKFLDGIYVSERGNI 185
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 33.5 bits (73), Expect = 0.023
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +2
Query: 2 QIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKW-FGS 178
++ NQ P G V R T G R +L+R + VD + RL VE+ F S
Sbjct: 413 ELFVNQTDHTPVGSLFWVLDRTYTRFGQR-MLQRWLQKPLVDKENIIERLDAVEELAFNS 471
Query: 179 KKELAAVRTVCSHVENMIKGVTKGFHTRC 265
++ A+R + + ++ KG+++ ++ RC
Sbjct: 472 NSQVQAIRKMLYRLPDLEKGLSRIYYQRC 500
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 29.5 bits (63), Expect = 0.38
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 26 KIPDGLTVHVKSRLVTV---KGP-RGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELA 193
K+PDG+ + SRL K P L F H +VD+ + L + E WF
Sbjct: 1564 KVPDGIFLKT-SRLPIFEANKAPYNAYLLDFFTHGSVDMLIEQNNLKQSEIWFVLNDFSL 1622
Query: 194 AVRTVCSHVENMIKGVT 244
+ T+CS + N++ VT
Sbjct: 1623 VLATICSCLGNLLNLVT 1639
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 28.3 bits (60), Expect = 0.88
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = -1
Query: 280 EHTQHASCMEAFSYSFNHVLYM*TDCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVP 101
EHT + + + Y + PH GK S +N E+R A+V+S + P
Sbjct: 101 EHTDNVTTSQTIRYETSSQPSQEVYHPHAGKAA-QSAHVMNSTESRPSSAHVSSSYTQKP 159
Query: 100 FENSAGP 80
F GP
Sbjct: 160 FAFPLGP 166
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 394 NSPKQKDELIIEGNSLEDVSSSAALIQQS 480
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = -1
Query: 208 DCPHGGKLLFGSEPFLNLQETRVYHANVNSQVFEVPFENSAGPFNCHQT 62
D P+G GS F+ V+H+N N+ ++ +N N H +
Sbjct: 386 DFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHS 434
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +2
Query: 59 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVCSHVENMIKG 238
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 239 VTK 247
++K
Sbjct: 1170 LSK 1172
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 192 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 82
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 8.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Frame = +1
Query: 373 APGVTVVNSPKQKDELIIEGNSLEDVSSSAA-------LIQQSTTVKNRDIRSS 513
AP V N +Q + +IEGN+ +SSS Q ++ R IRS+
Sbjct: 40 APFKAVDNINQQDEPTLIEGNNESSISSSTGDTFEEDFAYQDKVEIEERSIRST 93
>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 516 PRTSDIPILDCSRLLNESSR 457
P T+ + + DCS +L+ SSR
Sbjct: 189 PETTPLKLTDCSHMLSPSSR 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,973
Number of Sequences: 5004
Number of extensions: 51022
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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