Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00992
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)        102   2e-22
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               29   3.7  
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     28   4.9  
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)                    28   4.9  
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)                   28   6.5  
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 28   6.5  
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score =  102 bits (245), Expect = 2e-22
 Identities = 46/99 (46%), Positives = 68/99 (68%)
 Frame = +2

Query: 5   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 184
           I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++  V    ++V+ WF S+K
Sbjct: 560 ILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRK 619

Query: 185 ELAAVRTVCSHVENMIKGVTKGFHTRCVLCMLTSPLTVS 301
           ELA V+T+ +H+ENMIKGV  G+  +        P+ ++
Sbjct: 620 ELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIA 658



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/41 (68%), Positives = 34/41 (82%)
 Frame = +1

Query: 256 YKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 378
           YKMRAVYAHFPIN    E  +++E+RNFLGEKY+RRV+M P
Sbjct: 644 YKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684


>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +3

Query: 504 QKFLDGLYVSEKTTVV 551
           +KFLDG+YVSEKTT+V
Sbjct: 16  RKFLDGVYVSEKTTIV 31



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 463 ALIQQSTTVKNRDIR 507
           ALIQQST VKN+DIR
Sbjct: 2   ALIQQSTKVKNKDIR 16


>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 157 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 65
           L  TR+ +  V+S   EV  E S  P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 310 GNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 483
           G  ++ +++ LG++    +      T +       K+EL    +SLE+VS   A +Q S 
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255

Query: 484 TVKNRDIRS 510
             K+ +I S
Sbjct: 256 LTKDEEISS 264


>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 210 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 67
           QT++T A  F D       RRR F+  +S   C + L R+P  P++ T
Sbjct: 85  QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 26  KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 160
           K+ DGL VH+ ++ V  K P+    + KR  + L A+ I + +P + KV
Sbjct: 4   KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52


>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
          Length = 197

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
 Frame = -1

Query: 148 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 38
           TR YH NV   VF V        F  S G  N HQ  +  DR+P
Sbjct: 57  TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 10   SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 117
            S+ ++    R Y PC I SG++  APR    +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400


>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
          Length = 309

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 434 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 315
           +P  I S    G+L  +T G I T      PKKL   +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 53   VKSRLVTVKGPRGVLKRNFKHL 118
            V++R  TV  PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090


>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -3

Query: 464 AAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIEL 312
           AAE++TS   L  + S S C      VT   IFT  MY  P+++ ++   L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,573,591
Number of Sequences: 59808
Number of extensions: 381837
Number of successful extensions: 984
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)