Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00992
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   108   2e-24
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.61 
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    27   9.9  
AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  108 bits (260), Expect = 2e-24
 Identities = 50/84 (59%), Positives = 62/84 (73%)
 Frame = +1

Query: 256 YKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 435
           YKMR+VYAHFPIN    +GN  +EIRNFLGEK +RRV +  GV    S  QKDE+++EGN
Sbjct: 88  YKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGN 147

Query: 436 SLEDVSSSAALIQQSTTVKNRDIR 507
            ++ VS +AA IQQST VK +DIR
Sbjct: 148 DVQFVSQAAARIQQSTAVKEKDIR 171



 Score =  104 bits (250), Expect = 4e-23
 Identities = 46/99 (46%), Positives = 68/99 (68%)
 Frame = +2

Query: 5   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKK 184
           I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG +K
Sbjct: 4   IESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRK 63

Query: 185 ELAAVRTVCSHVENMIKGVTKGFHTRCVLCMLTSPLTVS 301
           ELAA+RTVCSH++NMIKGVT GF  +        P+ V+
Sbjct: 64  ELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVT 102



 Score = 33.9 bits (74), Expect = 0.086
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 504 QKFLDGLYVSEKTTVVLDD 560
           +KFLDG+YVSEKTT+V  D
Sbjct: 171 RKFLDGIYVSEKTTIVPTD 189


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 246 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 109
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 124 NSQVFEVPFENSAGPFNCHQTRFHMDR 44
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 124 NSQVFEVPFENSAGPFNCHQTRFHMDR 44
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 171 NHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVTRRDFT 52
           NH   ++R+     M T K  +    TP G L +T  + T
Sbjct: 427 NHIPDYKRKDLLKSMDTLKFCEIFRPTPTGALQLTAAEVT 466


>AF022970-7|AAB69900.2|  322|Caenorhabditis elegans Hypothetical
           protein F13A2.6 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 402 WRVNDSHTRCHLYPSD 355
           W V+D  T C+L+PSD
Sbjct: 71  WMVSDYDTSCYLFPSD 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,711,503
Number of Sequences: 27780
Number of extensions: 287521
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)