Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00992
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos...   102   2e-22
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim...   101   5e-22
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil...   101   5e-22
At1g05190.1 68414.m00523 ribosomal protein L6 family protein Sim...    40   0.002
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    29   2.3  
At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6)...    28   4.0  
At2g19500.1 68415.m02279 FAD-binding domain-containing protein /...    28   5.3  
At3g19320.1 68416.m02450 leucine-rich repeat family protein cont...    27   9.3  
At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenas...    27   9.3  

>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
           ribosomal protein L9, cytosolic - garden pea,
           PIR2:S19978
          Length = 194

 Score =  102 bits (244), Expect = 2e-22
 Identities = 50/84 (59%), Positives = 59/84 (70%)
 Frame = +1

Query: 256 YKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 435
           Y+MR VYAHFPIN      N  IEIRNFLGEK +R+V+M  GV +V S K KDE+I+EGN
Sbjct: 93  YRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGN 152

Query: 436 SLEDVSSSAALIQQSTTVKNRDIR 507
            +E VS S ALI Q   VK +DIR
Sbjct: 153 DIELVSRSCALINQKCHVKKKDIR 176



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 42/104 (40%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
 Frame = +2

Query: 5   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKW 169
           I++++ + IPDG+ + V ++++ V+GPRG L R+FKHL +D +++       R LK++ W
Sbjct: 4   ILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSW 63

Query: 170 FGSKKELAAVRTVCSHVENMIKGVTKGFHTRCVLCMLTSPLTVS 301
           FGS+K  A++RT  SHV+N+I GVT+GF  R        P+  S
Sbjct: 64  FGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINAS 107



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 504 QKFLDGLYVSEKTTVVLDD 560
           +KFLDG+YVSEK  + +++
Sbjct: 176 RKFLDGIYVSEKGKIAVEE 194


>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
           similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
           [Arabidopsis thaliana]
          Length = 194

 Score =  101 bits (241), Expect = 5e-22
 Identities = 49/84 (58%), Positives = 59/84 (70%)
 Frame = +1

Query: 256 YKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 435
           YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KDE++++GN
Sbjct: 93  YKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGN 152

Query: 436 SLEDVSSSAALIQQSTTVKNRDIR 507
            +E VS S ALI Q   VK +DIR
Sbjct: 153 DIELVSRSCALINQKCHVKKKDIR 176



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 39/104 (37%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
 Frame = +2

Query: 5   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKW 169
           I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ W
Sbjct: 4   ILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSW 63

Query: 170 FGSKKELAAVRTVCSHVENMIKGVTKGFHTRCVLCMLTSPLTVS 301
           FG++K  A++RT  SHV+N+I GVT+GF  +        P+  S
Sbjct: 64  FGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINAS 107



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +3

Query: 504 QKFLDGLYVSEKTTVVLDD 560
           +KFLDG+YVSEK+ +V ++
Sbjct: 176 RKFLDGIYVSEKSKIVEEE 194


>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
           to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
           thaliana]
          Length = 194

 Score =  101 bits (241), Expect = 5e-22
 Identities = 49/84 (58%), Positives = 59/84 (70%)
 Frame = +1

Query: 256 YKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGN 435
           YKMR VYAHFPIN         IEIRNFLGEK +R+V+M  GVT+V S K KDE++++GN
Sbjct: 93  YKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGN 152

Query: 436 SLEDVSSSAALIQQSTTVKNRDIR 507
            +E VS S ALI Q   VK +DIR
Sbjct: 153 DIELVSRSCALINQKCHVKKKDIR 176



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 39/104 (37%), Positives = 68/104 (65%), Gaps = 5/104 (4%)
 Frame = +2

Query: 5   IVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RLLKVEKW 169
           I++++ + IPD +T+ V ++++ V+GPRG L R+FKHL +D +++       + LK++ W
Sbjct: 4   ILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSW 63

Query: 170 FGSKKELAAVRTVCSHVENMIKGVTKGFHTRCVLCMLTSPLTVS 301
           FG++K  A++RT  SHV+N+I GVT+GF  +        P+  S
Sbjct: 64  FGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINAS 107



 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +3

Query: 504 QKFLDGLYVSEKTTVVLDD 560
           +KFLDG+YVSEK+ +V ++
Sbjct: 176 RKFLDGIYVSEKSKIVEEE 194


>At1g05190.1 68414.m00523 ribosomal protein L6 family protein
           Similar to Mycobacterium RlpF (gb|Z84395). ESTs
           gb|T75785,gb|R30580,gb|T04698 come from this gene
          Length = 223

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/88 (23%), Positives = 44/88 (50%)
 Frame = +2

Query: 8   VANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKE 187
           +  Q + +P  +T+ ++ + + VKGP G L   +    V++       L+V+K   +++ 
Sbjct: 46  IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEESGFLRVKKTVETRRA 104

Query: 188 LAAVRTVCSHVENMIKGVTKGFHTRCVL 271
                   +  +NM+ GV+KGF  + +L
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGFEKKLIL 132


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 286 PINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAA 465
           P   V  E  S+ ++ N   +  +R + + P  + V     + +L+IE N      SSA 
Sbjct: 706 PSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENG----ESSAV 761

Query: 466 LIQQSTTVKNR 498
            +QQST+V+ R
Sbjct: 762 ELQQSTSVRGR 772


>At1g79330.1 68414.m09245 latex-abundant protein, putative (AMC6) /
           caspase family protein similar to latex-abundant protein
           [Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
           PF00656: ICE-like protease (caspase) p20 domain
          Length = 410

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +2

Query: 17  QKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKV 160
           +++K+ DG  VHV ++ + ++    +LK+N  +  +++  + P L  V
Sbjct: 204 KELKLEDGAKVHVVNKSLPLQTLIDILKQNTGNNDIEVGKIRPTLFNV 251


>At2g19500.1 68415.m02279 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase, Zea mays [SP|Q9T0N8] [gi:3441978]
          Length = 501

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 431 PSMISS-SFCFGELTTVTPGAI 369
           PS+IS+ S  FG +TTVTPG +
Sbjct: 39  PSIISAASHDFGNITTVTPGGV 60


>At3g19320.1 68416.m02450 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560;
          Length = 493

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 196 GGKLLFGSEPFLN-LQETRVYHANVNSQVFEVP 101
           GGK L   + FLN L+E  ++HAN N+ V  VP
Sbjct: 187 GGKKL-RLDNFLNKLEEVTIFHANSNNFVGSVP 218


>At1g42970.1 68414.m04947 glyceraldehyde-3-phosphate dehydrogenase
           B, chloroplast (GAPB) / NADP-dependent
           glyceraldehydephosphate dehydrogenase subunit B
           identical to SP|P25857 Glyceraldehyde 3-phosphate
           dehydrogenase B, chloroplast precursor (EC 1.2.1.13)
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B) {Arabidopsis thaliana}
          Length = 447

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 20  KVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDI 130
           +VKI D  T+ V  +L+ V   R  LK  +  L +DI
Sbjct: 138 EVKIVDNETISVDGKLIKVVSNRDPLKLPWAELGIDI 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,557
Number of Sequences: 28952
Number of extensions: 264416
Number of successful extensions: 672
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)