Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00991
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           25   0.76 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   2.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.0  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   5.3  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.3  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.3  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 613 RIKSVQNMRATSTHHLPASI 554
           R+K V N  AT   H+PAS+
Sbjct: 97  RVKQVNNGFATLRQHIPASV 116


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 233 ENIYMPIKVIGIHWLS*VNMPACLAY 156
           EN  +P   +GI WL  V+   C+ Y
Sbjct: 537 ENYTLPASAVGIAWLY-VDNDCCIRY 561


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 482 QGFVFSFW*HNPNYHHANRHNTSVQEV 402
           QGF  S W +   Y  A+RH+   Q V
Sbjct: 140 QGFSSSTWCNYSAYSSASRHHVDHQPV 166


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -2

Query: 245 PTVNENIYMPIKVIGIH 195
           P     +Y P++++G+H
Sbjct: 187 PRTESAVYEPVRIMGVH 203


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 39  KTDMQFNRHIPYENVKEKNPSIQYNDHLYS 128
           +T ++ NR  PY   + K+ S+    H+Y+
Sbjct: 257 RTTLKNNRASPYPMQRPKSASLSPPPHVYN 286


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 655 VITILSLIYKWRSIRIKSVQNMRATSTHHLPASIGRVERLRTLDILSSVPLNLSSIS 485
           ++ I SLI KWR   +  VQ M  +S      S G      TL     V ++L ++S
Sbjct: 135 LMDIDSLITKWRYNHVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFVDLFNLS 191


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 655 VITILSLIYKWRSIRIKSVQNMRATSTHHLPASIGRVERLRTLDILSSVPLNLSSIS 485
           ++ I SLI KWR   +  VQ M  +S      S G      TL     V ++L ++S
Sbjct: 295 LMDIDSLITKWRYNHVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFVDLFNLS 351


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -3

Query: 655 VITILSLIYKWRSIRIKSVQNMRATSTHHLPASIGRVERLRTLDILSSVPLNLSSIS 485
           ++ I SLI KWR   +  VQ M  +S      S G      TL     V ++L ++S
Sbjct: 295 LMDIDSLITKWRYNHVLMVQRMIGSSQLGTGGSSGYQYLRSTLSDRYKVFVDLFNLS 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,211
Number of Sequences: 336
Number of extensions: 3709
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)