Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00991
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    64   1e-10
SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)                  46   4e-05
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  37   0.013
SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)                 33   0.16 
SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   4.6  
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_40387| Best HMM Match : GrpE (HMM E-Value=0)                        28   6.1  
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)               28   6.1  
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 32/88 (36%), Positives = 49/88 (55%)
 Frame = +3

Query: 255 IPFALSGELFPLDYRGLGGGVSYLALSLNFFIAVKCFPVLSSAIGLSFTYFLYAGIVTIC 434
           +P+ +  E+FPL  RG+   +S L      F   K F  +  AI +  TY+ Y G+  + 
Sbjct: 416 VPWLVMSEIFPLQARGIASSISTLCNWSLAFAVTKTFVNIEDAITIQGTYWFYGGLSFLG 475

Query: 435 MVVVWIMLPETKDKTLQEIEDRFRGTLL 518
            + V + +PETK KTL++IE  F GTL+
Sbjct: 476 FLFVLMFVPETKGKTLEQIERLFDGTLV 503


>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
          Length = 124

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +3

Query: 267 LSGELFPLDYRGLGGGVS-YLALSLNFFIAVKCFPVLSSAIGLSFTYFLYAGIVTICMVV 443
           L  E+FP   +G    ++  L    N F++     +L S IG S T+F Y  I  I +V 
Sbjct: 5   LLSEIFPSGIKGRAFSLATVLNWGTNVFVSFTFLDLLGS-IGTSGTFFFYGLICVIAIVF 63

Query: 444 VWIMLPETKDKTLQEI 491
           ++  +PETK+KTL++I
Sbjct: 64  IYKYVPETKNKTLEQI 79


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 396 FTYFLYAGIVTICMVVVWIMLPETKDKTLQEIEDRFRG 509
           +T+ ++  +V I     +  +PETK +T+++I D FRG
Sbjct: 143 YTFIVFMALVAIFWTFTFFFVPETKGRTIEDITDHFRG 180


>SB_25976| Best HMM Match : RVT_1 (HMM E-Value=5.3e-22)
          Length = 1421

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = +3

Query: 261  FALSGELFPLDYRGLGGGVSYLALSLNFFIAVKCFPVLSSAIGLSFTYFLYAGIVTICMV 440
            +  S ELFP   R    G S  A  +  F A   F V S  +     + + A    IC +
Sbjct: 784  YVYSSELFPTVVRNTAMGTSTSAARIGSFAAP--FTVYSQKVHPMMPFGIMALNALICGI 841

Query: 441  VVWIMLPETKDKTLQE 488
            +  + LPETKDK L +
Sbjct: 842  LC-MTLPETKDKPLPD 856


>SB_11833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 636

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = +3

Query: 261 FALSGELFPLDYRGLGGGVSYLALSLNFFIAVKCFPVLSSAIGLSFTYFLYAGIVTICMV 440
           +  S ELFP   R    G S  A  +  F A   F V S  +     + + A    IC +
Sbjct: 525 YVYSSELFPTVVRNTAMGTSTSAARIGSFAAP--FTVYSQKVHPMMPFGIMALNALICGI 582

Query: 441 VVWIMLPETKDKTLQE 488
           +  + LPETKDK L +
Sbjct: 583 LC-MTLPETKDKPLPD 597


>SB_14903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 261 FALSGELFPLDYRGLGGGVSYLALSLNFFIAVKCFPVLSSAIGLSFTYFLYAGIVTICMV 440
           F+ +  +F L   G+  G  Y   +L   +A K FP     IGL    F+ AG+    + 
Sbjct: 241 FSNASYVFLLVAYGIYAGAQYTVATLLNEMATKRFPNQEVLIGLLGFVFVIAGLPATVLA 300

Query: 441 VVWI 452
            +W+
Sbjct: 301 GIWL 304


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 420 IVTICMVVVWIMLPETKDKTLQEIEDRFRGTLLRMSRVLSLS 545
           +V +C+VV+ +   ETK + ++ +E+  R    R SR  SLS
Sbjct: 37  LVNLCLVVITMQFQETKAREIELMEENRRRQRYRSSR-FSLS 77


>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = +3

Query: 396 FTYFLYAGIVTICMVVVWIMLPETKDKTLQEIEDRFRG 509
           +T+ ++  +V    +  + ++PETK +++ +I  +FRG
Sbjct: 6   YTFIVFLVLVLGFWLFTYFLVPETKGRSIDDITRQFRG 43


>SB_40387| Best HMM Match : GrpE (HMM E-Value=0)
          Length = 328

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 462 ETKDKTLQEIEDRFRGTLLRMSRVLSLSTRPMEAGR 569
           E +DK + E+ED+++ +L     VL  S + +E  R
Sbjct: 176 EERDKLVTELEDKYKRSLAENQNVLQRSQKMVEEAR 211


>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 1311

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = -3

Query: 673 CDRIFNVITILSLIYKWRSI--RIKSVQNMRATSTHHLPASIGRVERLRTLD-ILSSVPL 503
           CD IF+ I  +    ++ SI  R  SV   R +S H    S+    RL ++  +LS VP 
Sbjct: 401 CD-IFDGIPPIKRPSRFSSIPSRFSSVP-YRLSSVHCRLNSVP--SRLSSVPFLLSLVPC 456

Query: 502 NLSSISCRVLSLVS 461
            LSS+ CR++SL S
Sbjct: 457 RLSSVPCRLISLPS 470


>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 64  IYLMKTLKRRTLLFSTTIICILAYISKGSY-VYAKQAGILTYDSQWIPITLIGIYMFSLT 240
           ++ +K        F  T  C    +S  ++ +Y     ILT ++ ++ I+L  I  F LT
Sbjct: 442 LHHLKNAMYLNAFFGFTFTCAPFLVSLATFAIYVLTGNILTANNAFVAISLFNILRFPLT 501

Query: 241 V 243
           V
Sbjct: 502 V 502


>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1786

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
 Frame = +1

Query: 4    NSNFLMVALDIERLICNLIAIYLMKTLKRRTLLFSTTIICILAYISKGSYV------YAK 165
            +SNF+++A  I     +     L+  L    LLF  T+  +L+ ++  SY+      + +
Sbjct: 1515 SSNFIVLAAIIRTPSLHNPGFTLLAGLAFSDLLFGLTVAPMLSTVNYFSYIGDFRCEFLQ 1574

Query: 166  QAGILTYDSQWIPITLIGIYMFSLTVGVSSYHLRY 270
               + TY    I  + + +      + + +YHLRY
Sbjct: 1575 LVTLFTYSLGAISFSTVVLISLDRVIAI-NYHLRY 1608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,429,007
Number of Sequences: 59808
Number of extensions: 456403
Number of successful extensions: 965
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)