Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00991
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    27   0.13 
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.7  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 151 YVYAKQAGILTYDSQWIPITLIGIYMFSLTVGVSSYHL---RYQGSFSRWI 294
           YVYA+++      ++W+ I    +Y FS T+    Y+L   +Y+ +F + I
Sbjct: 293 YVYAQESDYYPDLNEWLYILSGCLYYFSTTINPILYNLMSIKYRNAFKQTI 343


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 103 IEGFFSLTFS*GIWRLNCISVFR 35
           I  F+S  F    WRL C   F+
Sbjct: 358 IYAFYSADFRLAFWRLTCRKCFK 380


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 449 PNYHHANRHNTSVQEVRERQP 387
           P +HH +    S+Q +  RQP
Sbjct: 349 PPHHHHHHQTQSLQHLHYRQP 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,145
Number of Sequences: 438
Number of extensions: 4478
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)