Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00990
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1434 - 33568258-33569415                                         32   0.34 
01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    28   5.5  
07_03_0375 + 17408815-17409035,17422820-17423477,17423780-174241...    28   7.2  
06_03_0931 - 26052135-26052176,26052273-26052377,26052489-260525...    28   7.2  
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331...    27   9.6  

>04_04_1434 - 33568258-33569415
          Length = 385

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 509 DMDFYIFNGIIY*ETTRVVYYINTIIIPKHGHAVR 613
           +M FY FN I+Y +  R +Y +NTI + +   A++
Sbjct: 132 EMPFYWFNFIVYDDADRRMYCVNTIFVVRLARAIQ 166


>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +1

Query: 4   PSLIYILSGQKLDIYTLRRGGDFCDWTHKFFGPGNFKIFHMFIGFA 141
           P+ +  +   +  I+ ++R    C W +   G  N+KIF +F+ +A
Sbjct: 73  PAFLPDVEDAESPIHEIKRKDHHCIWINNCVGHENYKIFLVFVLYA 118


>07_03_0375 +
           17408815-17409035,17422820-17423477,17423780-17424161,
           17424236-17424550,17424727-17425118,17432479-17432508
          Length = 665

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = +2

Query: 335 VILYVPCAILKFYSLKRIIIFHMVFLFKHYMF*RERFMRNLGGP 466
           +++++ C ++K  S+   +  H +F F+ YM   ++++RN   P
Sbjct: 585 IMMHLLCHLVKEISILGPVYLHNMFPFERYMGVLKKYVRNRARP 628


>06_03_0931 -
           26052135-26052176,26052273-26052377,26052489-26052584,
           26052686-26052757,26052879-26052974,26053054-26053155,
           26053258-26053347,26053452-26053535,26053623-26053697,
           26053847-26053930,26054012-26054242
          Length = 358

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 245 MRRLFVRLVHF*-FQNETIKRTNAPVRSVVYVILYVPC 355
           +R + V+L  F   Q   +KR  AP +SVV+  L++ C
Sbjct: 208 VRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCC 245


>08_02_1418 -
           26931896-26932339,26932435-26932668,26932805-26933110,
           26933462-26933644,26934386-26934493
          Length = 424

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 73  CDWTHKFFGPGNFKIFHMFIGFARCVC-FVFS 165
           C W  +  G  N++ F MF+     +C +VF+
Sbjct: 190 CPWVGQCIGKRNYRFFFMFVSSTTLLCVYVFA 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,989
Number of Sequences: 37544
Number of extensions: 236408
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)