Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00990
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF125959-3|AAD14731.1|  531|Caenorhabditis elegans Udp-glucurono...    28   4.9  
U88177-4|AAB42289.2|   80|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 19  ILSGQKLDIYTLRRGGDFCDWTHKFFGPGNFKIFHMFI 132
           +L  +++D+YT   G D+  W        +   FH +I
Sbjct: 260 VLYSEEIDVYTFLDGNDYSSWIRAAIIGSSLLFFHSYI 297


>AF125959-3|AAD14731.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein14 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 317 VRSVVYVILYVPCAILKFYSLKRIIIFHMVFLFKHYMF 430
           V+++VY +L+       F S K I+IF+ +F F H  F
Sbjct: 3   VKTLVYFLLFTG-----FISCKNILIFNPIFAFSHVKF 35


>U88177-4|AAB42289.2|   80|Caenorhabditis elegans Hypothetical
           protein F53E10.3 protein.
          Length = 80

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 395 FHMVFLFKHYMF*RERFMRNLGGPILYNYPFP*KLNFLDMDFYIFNGIIY 544
           FH+   F+     +  F + L   + +N+P P KL FL +  + + G+ Y
Sbjct: 30  FHLFRNFQKIPIFKNLFRKRLSEALNFNFPTPVKL-FLKLSIFFYFGMSY 78


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 129 EHMKNFKISRTKKFMRPITKVSSSPQCIYVKL 34
           E + N  IS+TK   + +TKVS++ + +  KL
Sbjct: 579 EKISNITISKTKPLKKAVTKVSAAKKILNKKL 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,890
Number of Sequences: 27780
Number of extensions: 246017
Number of successful extensions: 515
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)