Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00989
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.003
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 34 0.018
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.89
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 29 0.89
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 2.1
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 27 2.1
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 27 3.6
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 4.7
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 26 6.3
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.3
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.003
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = -1
Query: 501 EISFTCPALSLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLP 322
++S P + LP SA++P +P P + P P P S P P+S P + P +P
Sbjct: 1016 KLSSKAPPVPLP---SADAPPIPVPSTAPP-----VPIPTSTPPVPKSSSGAPSAPPPVP 1067
Query: 321 NPESWCPN---PESCPKLPNPESRP 256
P S P+ P P +P P P
Sbjct: 1068 APSSEIPSIPAPSGAPPVPAPSGIP 1092
Score = 31.9 bits (69), Expect = 0.095
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 471 LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 292
+PKLSS ++P +P P + P P+ P P S P P+S P+ P P
Sbjct: 1014 VPKLSS-KAPPVPLPSADAPPIP--VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPS 1070
Query: 291 S-CPKLPNPESRP 256
S P +P P P
Sbjct: 1071 SEIPSIPAPSGAP 1083
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 34.3 bits (75), Expect = 0.018
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -1
Query: 474 SLPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNP 295
S P + +S P P S P P P+P S P P P P S P P + +P
Sbjct: 126 SAPAPPTPQSELRP-PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 294 ESCPKLPN 271
S P LP+
Sbjct: 185 PSAPSLPS 192
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -1
Query: 435 PNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPESCPKLPNPESRP 256
P P P+P S P P P P S P + + +P S P + P +P P+ P
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP-PKVPP 203
Query: 255 SHRTQS 238
+Q+
Sbjct: 204 PPLSQA 209
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 0.89
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 390 NPESWCP-NPESWCPNPESCPKLPNPESWCPNPESCPKLP-NPESRP 256
+P S P P+S P S P P P P P S P +P P S P
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 596 PPMAVPIPPNEVAMPSRPFSILSSSIPWS 510
PPM+VP PP+ MP+ P S +P S
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -1
Query: 432 NPESWCP-NPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPESCPKLPNPESRP 256
+P S P P+S P P+ P P P P S P P+ P S P P P S
Sbjct: 1685 HPVSTPPVRPQSAAP-PQMSAPTPP---PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740
Query: 255 SHRTQSHDRNYRIQ 214
DR+ +Q
Sbjct: 1741 PSVPNPGDRSALLQ 1754
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 28.7 bits (61), Expect = 0.89
Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = -1
Query: 471 LPKLSSAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCPNPE 292
+P L +E PKL N P S + PNP+S +L ES PN E
Sbjct: 223 IPFLGESEIPKLLANVEPSANAHGLGIEPAS---KASASSPNPQSGTRLGTKESVAPNNE 279
Query: 291 SC---PKLPNPESRP 256
P L NP + P
Sbjct: 280 GSSNPPSLVNPPTDP 294
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 529 DKIEKGLEGIATSLGGIGTAIG 594
D + LEGI + GGIG AIG
Sbjct: 354 DSLLTRLEGIGNAFGGIGNAIG 375
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 553 GIATSLGGIGTAIGGAS 603
GIA+ LGGI AIGGA+
Sbjct: 301 GIASFLGGIANAIGGAN 317
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 492 FTCP--ALSLPKLSSA--ESPKLPNPESWCPNPESWCPNPESWCPNPESW 355
+T P A+ +P L A +S P PE++ NP+ W PN + +P++W
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPNGLAE-QSPKNW 449
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 4.7
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = -1
Query: 495 SFTCPALSLPKLSS----AESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPK 328
S C A +PK S +E +PE S C +P P+ S CPN PK
Sbjct: 259 SSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHC-SPIDARPSTPS-CPNASISPK 316
Query: 327 LPN 319
PN
Sbjct: 317 TPN 319
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 95 YSFDFTASINIATAMREGLCYCKY 24
Y+F+ TA M+E LCY Y
Sbjct: 198 YAFNRTADFETVREMKEKLCYVSY 221
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 8.3
Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Frame = -1
Query: 456 SAESPKLPNPESWCPNPESWCPNPESWCPNPESWCPNPESCPKLPNPESWCP-NPESCPK 280
S+ S LPN + N P S N S P P + P P SW P N +
Sbjct: 39 SSSSSTLPNYAASSLNSR---PVSSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYA 95
Query: 279 LPNPES 262
P P S
Sbjct: 96 SPPPSS 101
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.3
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Frame = -1
Query: 459 SSAESPKLPN--PESWCPN--PESWCPNPESWCPNPESWCPNPESCPKLP-NPESWCP-- 301
+S +P +P P S P P P P P +P + P P P S P
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAI 284
Query: 300 NPESCPKLPNPESRPS 253
N S P LP P SR S
Sbjct: 285 NSTSKPPLPPPSSRVS 300
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,773
Number of Sequences: 5004
Number of extensions: 56681
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -