Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00987
(454 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 111 3e-25
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 106 1e-23
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 31 0.57
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 27 7.1
09_02_0608 + 11194889-11195134,11195185-11195406 27 7.1
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 27 9.3
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 27 9.3
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 111 bits (267), Expect = 3e-25
Identities = 54/84 (64%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = +2
Query: 5 DNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVG 184
+NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPFRR+ GGVG
Sbjct: 9 NNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVG 68
Query: 185 RCAQAK-QFGTTQGRWPKKSAEFL 253
R AQAK + QGRWP KSA F+
Sbjct: 69 RTAQAKSRHSNGQGRWPAKSARFI 92
Score = 102 bits (245), Expect = 1e-22
Identities = 48/69 (69%), Positives = 56/69 (81%)
Frame = +1
Query: 244 RIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEV 423
R L LL+NA+SNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCHIE+
Sbjct: 90 RFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 149
Query: 424 CLSEREDAV 450
LSE+E+ V
Sbjct: 150 ILSEKEEPV 158
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 106 bits (254), Expect = 1e-23
Identities = 49/69 (71%), Positives = 57/69 (82%)
Frame = +1
Query: 244 RIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEV 423
R L LL+NA+SNAD K LDVD L + HIQVN+A RRRTYRAHGRINPYMSSPCH+E+
Sbjct: 102 RFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVEL 161
Query: 424 CLSEREDAV 450
LSE+E+AV
Sbjct: 162 ILSEKEEAV 170
Score = 97.5 bits (232), Expect = 4e-21
Identities = 53/97 (54%), Positives = 63/97 (64%), Gaps = 13/97 (13%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYLKNVIEKK 145
P NP KS KA G +LRVHFK NT ETA A+RK+PL +A RYL++VI K
Sbjct: 8 PSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHK 67
Query: 146 ECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFL 253
+ IPFRR+ GGVGR AQ K + QGRWP KSA F+
Sbjct: 68 QAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFI 104
>03_02_0348 +
7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 30.7 bits (66), Expect = 0.57
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 166 LQRRRWSLCSSKAVWHNTGSLAQEIRRIPLQLLRNADSNADNKT 297
LQ R SL S++ +N G++ IR I + ADS+ D+KT
Sbjct: 569 LQSRISSLLDSESPQNNAGNILDSIRNILKDIEDEADSSNDSKT 612
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 327 HSGKSRALPTQT-YIPCSRSHQPLHVVSLPHRSMSQ 431
HSG R+ P+ T P P HV S PHR Q
Sbjct: 8 HSGLPRSPPSATGRQPYEAQFGPFHVPSRPHRGPDQ 43
>09_02_0608 + 11194889-11195134,11195185-11195406
Length = 155
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 341 ARPAYADVHTVLTVASTPTCRLPATS 418
AR A +D+ T+L + + P RLP TS
Sbjct: 24 ARRALSDLQTILGLGAAPPQRLPQTS 49
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/75 (22%), Positives = 31/75 (41%)
Frame = +1
Query: 148 VYSIPSLQRRRWSLCSSKAVWHNTGSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDH 327
V SI LQ + ++ + WH +++ R+ LQL + + K LD + +
Sbjct: 89 VKSISDLQLPKAAILGNHDCWHTYQFSEKKVDRVQLQLESLGEQHVGYKCLDFPTIKLSV 148
Query: 328 IQVNRAPCLRRRTYR 372
+ C R +R
Sbjct: 149 VGGRPFSCGGNRIFR 163
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 354 TQTYIPCSRSHQPLHVVSLPHRSMSQRTRR 443
T +PCSR +P+HV S S SQ +R
Sbjct: 1227 THGTLPCSRDDEPVHVPSDFGSSKSQDNQR 1256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,035,576
Number of Sequences: 37544
Number of extensions: 256578
Number of successful extensions: 781
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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