Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00987
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              125   1e-29
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_6965| Best HMM Match : EB (HMM E-Value=1.3)                         27   9.6  
SB_6041| Best HMM Match : UBX (HMM E-Value=1)                          27   9.6  

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  125 bits (302), Expect = 1e-29
 Identities = 58/86 (67%), Positives = 70/86 (81%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
           P+NP KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR++NGGV
Sbjct: 8   PENPTKSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRKYNGGV 67

Query: 182 GRCAQAKQFGT--TQGRWPKKSAEFL 253
           GR AQAK      +QGRWPKKSAE L
Sbjct: 68  GRKAQAKNLKVPGSQGRWPKKSAEIL 93



 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 37/57 (64%), Positives = 45/57 (78%)
 Frame = +1

Query: 220 GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 390
           G   ++   I LQLL+NA+SNA+ K LDVD LV++HIQVN AP +RRRTYRAHGRIN
Sbjct: 83  GRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 217  CCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNSTTERHL 92
            CC  +  +ST  N+ V +  W+       VFE  ++T E +L
Sbjct: 1374 CCTCVTVVSTPDNSVVVSRTWDVRKSSAFVFEERSTTRELNL 1415


>SB_6965| Best HMM Match : EB (HMM E-Value=1.3)
          Length = 514

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 109 CCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVW 210
           CC LP++    +R+ ++ SLQR+  ++ S + V+
Sbjct: 437 CCPLPKRLSCTDRIRAVASLQRKFETMQSLENVY 470


>SB_6041| Best HMM Match : UBX (HMM E-Value=1)
          Length = 651

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 109 CCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVW 210
           CC LP++    +R+ ++ SLQR+  ++ S + V+
Sbjct: 345 CCPLPKRLSCTDRIRAVASLQRKFETMQSLENVY 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,532
Number of Sequences: 59808
Number of extensions: 298175
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)