Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00987
(454 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA ... 146 4e-35
BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17 p... 146 4e-35
BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17 p... 146 4e-35
BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17 p... 146 4e-35
BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17 p... 146 4e-35
BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17 p... 146 4e-35
AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17 p... 146 4e-35
AK130593-1|BAC85391.1| 136|Homo sapiens protein ( Homo sapiens ... 75 2e-13
AY129010-1|AAM98753.1| 198|Homo sapiens unknown protein. 31 1.8
>X53777-1|CAA37793.1| 184|Homo sapiens protein ( Human L23 mRNA for
putative ribosomal protein. ).
Length = 184
Score = 146 bits (353), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PFRR+NGGV
Sbjct: 8 PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGV 67
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GRCAQAKQ+G TQGRWPKKSAEFL
Sbjct: 68 GRCAQAKQWGWTQGRWPKKSAEFL 91
Score = 108 bits (260), Expect = 8e-24
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 CSSKAVWHNT-GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRT 366
C+ W T G ++ L +L+NA+SNA+ K LDVD LVI+HIQVN+AP +RRRT
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRT 129
Query: 367 YRAHGRINPYMSSPCHIEVCLSEREDAV 450
YRAHGRINPYMSSPCHIE+ L+E+E V
Sbjct: 130 YRAHGRINPYMSSPCHIEMILTEKEQIV 157
>BC106031-1|AAI06032.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 146 bits (353), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PFRR+NGGV
Sbjct: 8 PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGV 67
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GRCAQAKQ+G TQGRWPKKSAEFL
Sbjct: 68 GRCAQAKQWGWTQGRWPKKSAEFL 91
Score = 108 bits (260), Expect = 8e-24
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 CSSKAVWHNT-GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRT 366
C+ W T G ++ L +L+NA+SNA+ K LDVD LVI+HIQVN+AP +RRRT
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRT 129
Query: 367 YRAHGRINPYMSSPCHIEVCLSEREDAV 450
YRAHGRINPYMSSPCHIE+ L+E+E V
Sbjct: 130 YRAHGRINPYMSSPCHIEMILTEKEQIV 157
>BC066324-1|AAH66324.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 146 bits (353), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PFRR+NGGV
Sbjct: 8 PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGV 67
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GRCAQAKQ+G TQGRWPKKSAEFL
Sbjct: 68 GRCAQAKQWGWTQGRWPKKSAEFL 91
Score = 105 bits (252), Expect = 7e-23
Identities = 51/88 (57%), Positives = 64/88 (72%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 CSSKAVWHNT-GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRT 366
C+ W T G ++ L +L+NA+SNA+ K LDVD LVI+HIQVN+AP +RRRT
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRT 129
Query: 367 YRAHGRINPYMSSPCHIEVCLSEREDAV 450
YRA GRINPYMSSPCHIE+ L+E+E V
Sbjct: 130 YRARGRINPYMSSPCHIEMILTEKEQIV 157
>BC066323-1|AAH66323.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 146 bits (353), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PFRR+NGGV
Sbjct: 8 PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGV 67
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GRCAQAKQ+G TQGRWPKKSAEFL
Sbjct: 68 GRCAQAKQWGWTQGRWPKKSAEFL 91
Score = 108 bits (260), Expect = 8e-24
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 CSSKAVWHNT-GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRT 366
C+ W T G ++ L +L+NA+SNA+ K LDVD LVI+HIQVN+AP +RRRT
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRT 129
Query: 367 YRAHGRINPYMSSPCHIEVCLSEREDAV 450
YRAHGRINPYMSSPCHIE+ L+E+E V
Sbjct: 130 YRAHGRINPYMSSPCHIEMILTEKEQIV 157
>BC017831-1|AAH17831.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 146 bits (353), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PFRR+NGGV
Sbjct: 8 PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGV 67
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GRCAQAKQ+G TQGRWPKKSAEFL
Sbjct: 68 GRCAQAKQWGWTQGRWPKKSAEFL 91
Score = 108 bits (260), Expect = 8e-24
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 CSSKAVWHNT-GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRT 366
C+ W T G ++ L +L+NA+SNA+ K LDVD LVI+HIQVN+AP +RRRT
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRT 129
Query: 367 YRAHGRINPYMSSPCHIEVCLSEREDAV 450
YRAHGRINPYMSSPCHIE+ L+E+E V
Sbjct: 130 YRAHGRINPYMSSPCHIEMILTEKEQIV 157
>BC000502-1|AAH00502.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 146 bits (353), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PFRR+NGGV
Sbjct: 8 PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGV 67
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GRCAQAKQ+G TQGRWPKKSAEFL
Sbjct: 68 GRCAQAKQWGWTQGRWPKKSAEFL 91
Score = 108 bits (260), Expect = 8e-24
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 CSSKAVWHNT-GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRT 366
C+ W T G ++ L +L+NA+SNA+ K LDVD LVI+HIQVN+AP +RRRT
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRT 129
Query: 367 YRAHGRINPYMSSPCHIEVCLSEREDAV 450
YRAHGRINPYMSSPCHIE+ L+E+E V
Sbjct: 130 YRAHGRINPYMSSPCHIEMILTEKEQIV 157
>AB061824-1|BAB79462.1| 184|Homo sapiens ribosomal protein L17
protein.
Length = 184
Score = 146 bits (353), Expect = 4e-35
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+NP KSCK+RGSNLRVHFKNT ETA AI+ M +R+A +YLK+V +K+C+PFRR+NGGV
Sbjct: 8 PENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGV 67
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GRCAQAKQ+G TQGRWPKKSAEFL
Sbjct: 68 GRCAQAKQWGWTQGRWPKKSAEFL 91
Score = 108 bits (260), Expect = 8e-24
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Frame = +1
Query: 190 CSSKAVWHNT-GSLAQEIRRIPLQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRT 366
C+ W T G ++ L +L+NA+SNA+ K LDVD LVI+HIQVN+AP +RRRT
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRT 129
Query: 367 YRAHGRINPYMSSPCHIEVCLSEREDAV 450
YRAHGRINPYMSSPCHIE+ L+E+E V
Sbjct: 130 YRAHGRINPYMSSPCHIEMILTEKEQIV 157
>AK130593-1|BAC85391.1| 136|Homo sapiens protein ( Homo sapiens
cDNA FLJ27083 fis, clone SPL03425. ).
Length = 136
Score = 74.5 bits (175), Expect = 2e-13
Identities = 32/54 (59%), Positives = 44/54 (81%)
Frame = +1
Query: 277 SNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 438
SNA+ K LD+D L+I+ IQVN+AP + TYRAHG+INPY++S CHIE+ L+E+
Sbjct: 36 SNAEFKVLDIDSLIIEPIQVNKAPKMHCWTYRAHGQINPYVTSACHIEMILTEK 89
>AY129010-1|AAM98753.1| 198|Homo sapiens unknown protein.
Length = 198
Score = 31.1 bits (67), Expect = 1.8
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 312 ASHRPHSGKSRALPTQTYIPCSRSHQPLHVVSLPHR-SMSQRTRR 443
+S R HS S+ L +Q++ P SRSH P PH S S R+ R
Sbjct: 92 SSRRAHSSWSQNLHSQSHSPHSRSHSPHSRSHSPHSWSHSLRSSR 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,526,340
Number of Sequences: 237096
Number of extensions: 1319055
Number of successful extensions: 2919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2919
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3758237868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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