Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00987
(454 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 132 9e-32
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 107 3e-24
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 2.1
Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical... 27 6.4
AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related ... 27 8.4
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 132 bits (320), Expect = 9e-32
Identities = 59/84 (70%), Positives = 70/84 (83%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF+GG+
Sbjct: 10 PENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGI 69
Query: 182 GRCAQAKQFGTTQGRWPKKSAEFL 253
GR AQ KQ+ TTQGRWP KSA+FL
Sbjct: 70 GRAAQTKQWNTTQGRWPVKSADFL 93
Score = 107 bits (258), Expect = 3e-24
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = +1
Query: 253 LQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 432
L LL+NA+SNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 94 LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153
Query: 433 EREDAVA 453
E+ED V+
Sbjct: 154 EKEDVVS 160
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 107 bits (258), Expect = 3e-24
Identities = 50/67 (74%), Positives = 57/67 (85%)
Frame = +1
Query: 253 LQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 432
L LL+NA+SNA+ K LDVD LVI+HI V RA LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66 LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125
Query: 433 EREDAVA 453
E+ED V+
Sbjct: 126 EKEDVVS 132
Score = 87.0 bits (206), Expect = 6e-18
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +2
Query: 2 PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 169
P+N KSCKARGS+LRVHFKNT+E AMA+R MPLRRA +L +V E KE +PFRRF
Sbjct: 10 PENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 175 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 50
AV A W L +F+ + FE+ NS + S CHC +C +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 28.7 bits (61), Expect = 2.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -1
Query: 415 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPK-FCCQRLSQRSSITAEEFGG 239
CG+ET R ++G C G A D C C P+ CC + +IT F
Sbjct: 1123 CGQETRKRKCLSLQYGC-ACTGNATDTSVCAS-SVCLFPRTSCCTGFKKMVNITGRTF-- 1178
Query: 238 FLGP 227
+ GP
Sbjct: 1179 YCGP 1182
>Z81041-7|CAE17709.1| 95|Caenorhabditis elegans Hypothetical
protein C27A7.9 protein.
Length = 95
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = -1
Query: 415 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 287
CG +T R C + +C G +L C + K CC
Sbjct: 40 CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81
>AL132948-36|CAD57707.2| 186|Caenorhabditis elegans Hypothetical
protein Y39B6A.48 protein.
Length = 186
Score = 27.1 bits (57), Expect = 6.4
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = -1
Query: 253 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVF--EVTNSTTERHLSDC 83
E FG G ++ C S + + + ++ T +++ VF + +ER +
Sbjct: 30 ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89
Query: 82 HCGLICVLKVNTEV*TTSFAGFRRV 8
CG +CV + +V F GF+ +
Sbjct: 90 MCGSVCVSLMEPDVEAGVFIGFKHI 114
>AF324054-1|AAK01415.1| 162|Caenorhabditis elegans Ly-6-related
protein HOT-2 protein.
Length = 162
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -1
Query: 163 TEWN---TLFLFNHVF--EVTNSTTERHLSDCHCGLICVLKVNTEV*TTSFAGFRRV 8
T W T +++ VF + +ER + CG +CV + +V F GF+ +
Sbjct: 21 TSWKYLQTTYIYPKVFTDRCRDPNSERGMPTVMCGSVCVSLMEPDVEAGVFIGFKHI 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,730,097
Number of Sequences: 27780
Number of extensions: 215099
Number of successful extensions: 602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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