Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00987
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   116   7e-27
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   115   1e-26
At4g29200.1 68417.m04177 hypothetical protein                          29   1.9  
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    28   2.6  
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator...    27   5.9  
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    27   5.9  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    27   5.9  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  116 bits (279), Expect = 7e-27
 Identities = 57/85 (67%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
           PDN  KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GV
Sbjct: 8   PDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGV 67

Query: 182 GRCAQAK-QFGTTQGRWPKKSAEFL 253
           GR AQAK +    QGRWP KSA+F+
Sbjct: 68  GRTAQAKNRHSNGQGRWPAKSAQFV 92



 Score =  101 bits (241), Expect = 3e-22
 Identities = 47/66 (71%), Positives = 55/66 (83%)
 Frame = +1

Query: 253 LQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 432
           L LL+NA+SNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMS+PCHIE+ LS
Sbjct: 93  LDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILS 152

Query: 433 EREDAV 450
           E+E+ V
Sbjct: 153 EKEEPV 158


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  115 bits (277), Expect = 1e-26
 Identities = 56/85 (65%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 181
           PDN  KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GV
Sbjct: 8   PDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGV 67

Query: 182 GRCAQAK-QFGTTQGRWPKKSAEFL 253
           GR AQAK +    QGRWP KSA+F+
Sbjct: 68  GRTAQAKNRHSNGQGRWPAKSAQFV 92



 Score =  101 bits (241), Expect = 3e-22
 Identities = 47/66 (71%), Positives = 55/66 (83%)
 Frame = +1

Query: 253 LQLLRNADSNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 432
           L LL+NA+SNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMS+PCHIE+ LS
Sbjct: 93  LDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILS 152

Query: 433 EREDAV 450
           E+E+ V
Sbjct: 153 EKEEPV 158


>At4g29200.1 68417.m04177 hypothetical protein
          Length = 457

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = -1

Query: 304 RPK-FCCQRLSQRSSITAEEFGGFLGPATLCCAKLLCLSTATNAAVEATEWNTLFLFNHV 128
           RPK  CC R  +   + ++ F   LGP    C   L ++   +  +E + W   F   H+
Sbjct: 195 RPKPICCFRTCKAFILRSDFFNSMLGPLIFLCRSPL-INGHGHHLIEISPWRFWFFIYHL 253


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 242 RISWASDPVLCQTALLEHSD 183
           R+SWASD +LCQ  L    D
Sbjct: 9   RVSWASDSMLCQVKLFLSDD 28


>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower] {Brassica
           oleracea}
          Length = 408

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 148 VYSIPSLQRRRWSLCSS 198
           V SIPSL RR W L SS
Sbjct: 43  VVSIPSLSRRSWRLASS 59


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 163 SLQRRRWSLCSSKAVWHNTGSLAQEIRRIPLQLLRNADSNADNKTLDVDRL 315
           S++RR+WS   +K +      L QE+++I L       S+ +  T D+D +
Sbjct: 132 SVKRRKWSTEENKNL---AKGLKQEVQKILLSEAIERSSDLEGATYDIDTI 179


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 163 SLQRRRWSLCSSKAVWHNTGSLAQEIRRIPLQLLRNADSNADNKTLDVDRL 315
           S++RR+WS   +K +      L QE+++I L       S+ +  T D+D +
Sbjct: 345 SVKRRKWSTEENKNL---AKGLKQEVQKILLSEAIERSSDLEGATYDIDTI 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,069,441
Number of Sequences: 28952
Number of extensions: 195464
Number of successful extensions: 534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)