Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00985
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.2  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   5.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 234 RSIFVHTLCVVVFXIYLNFIDKSIDNSN 317
           R +F+   C  +   YLNFI   +D+ +
Sbjct: 355 RRVFIMDNCEELIPEYLNFIKGVVDSED 382


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 60   YYDNPYGEDPVTH 98
            + +N YG+D VTH
Sbjct: 1377 HVENDYGQDSVTH 1389


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 240 IFVHTLCVVVFXIYLNFIDKSIDNSNSYLPGKGE 341
           +F+    V+   + LNF   +++  N YL  K E
Sbjct: 241 VFITGRFVIKILVALNFFTSTLEIDNLYLKHKLE 274


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 537 IIKPISFTYNLKYSCKANSCSMALS 611
           ++  ++ ++    SC + S SMALS
Sbjct: 535 LVANVAISFGYLISCVSRSVSMALS 559


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 537 IIKPISFTYNLKYSCKANSCSMALS 611
           ++  ++ ++    SC + S SMALS
Sbjct: 535 LVANVAISFGYLISCVSRSVSMALS 559


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,907
Number of Sequences: 336
Number of extensions: 3837
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)