Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00985
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)            29   4.9  
SB_55630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)                 28   6.4  
SB_36438| Best HMM Match : TmoB (HMM E-Value=8.2)                      28   8.5  
SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)              28   8.5  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       28   8.5  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = +3

Query: 132 LYV*ISIFLYVCIHVQTRSTTNTQTYKCSRAADFRSIFVHTLCVVVFXIYL 284
           +Y+ I I++Y+ I++ T + T T TY  +    +   + +T   V   +Y+
Sbjct: 13  IYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYV 63



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 132 LYV*ISIFLYVCIHVQTRSTTNTQTYKCSRAADFRSIFVHTLCVVVFXIYL 284
           +Y+ I I++Y+ I++   + T T TY  +    +   + +T   V   +Y+
Sbjct: 11  IYIYIYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYV 61



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 LYV*ISIFLYVCIHVQTRSTTNTQTYKCSRAADFRSIFVHTLCVVVFXIYL 284
           +Y+ I I++Y+ I+  T + T T TY  +    +   + +    V   +Y+
Sbjct: 15  IYIYIYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYV 65



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 LYV*ISIFLYVCIHVQTRSTTNTQTYKCSRAADFRSIFVHTLCVVVFXIYL 284
           +Y+ I I++Y   +  T + T T TY  +    +  ++V+    V   +Y+
Sbjct: 19  IYIYIYIYIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYV 69


>SB_52009| Best HMM Match : Plasmodium_HRP (HMM E-Value=7.9)
          Length = 231

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 174 VQTRSTTNTQTYKCSRAADFRSIFVH 251
           +QTR  TNTQT KC+        +VH
Sbjct: 173 IQTRKCTNTQTPKCTYTQQDTHTYVH 198


>SB_55630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 296 VNKI*IYXEHNNT*GVYEYRSEVC 225
           V+ I +Y EHNNT     Y++ VC
Sbjct: 197 VSSIILYPEHNNTKAATSYKNSVC 220


>SB_27457| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-17)
          Length = 352

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 255 LCVVVFXIYLNFIDKSIDNSNSYL 326
           +CV V  I LN ID S DN+  YL
Sbjct: 261 ICVQVSTIVLNMIDSSHDNARLYL 284


>SB_36438| Best HMM Match : TmoB (HMM E-Value=8.2)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = -2

Query: 271 NTTTHKVCTNIDRKSAAREHL*VCVLVVDRVWTCIHTY 158
           N +T+ +   +DR++  R+ +  C + + RV  C+++Y
Sbjct: 39  NASTNVLIEQMDRRNHWRDRVQTCAVPLRRVHRCVYSY 76


>SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)
          Length = 169

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 507 YIFIRLCENYIIKPISFTYNLKYSCKA 587
           +I   LCE Y+IKP + T  L   CK+
Sbjct: 61  FITCGLCEGYLIKPTTITECLHTFCKS 87


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 184  DQRPIHKPTNVRARQTSDLYSYT 252
            D++P+HK  N+R     D+Y+ T
Sbjct: 4991 DEKPVHKIQNIRLDHQDDIYTLT 5013


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,931,723
Number of Sequences: 59808
Number of extensions: 414755
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)