Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00985
         (704 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    38   0.035
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    31   5.3  
AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens ...    30   9.3  

>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 37.9 bits (84), Expect = 0.035
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 134 VCLNIXLFVCVYTCPDTINDQYTNLQMFARGRLPIYIRTHLMCC 265
           +C+++ ++VCV+ C       YT++ +  R R  +Y+RTH   C
Sbjct: 80  MCMHVCVYVCVHACMCVCTCAYTHVFVCVRVRTCVYMRTHTHIC 123


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 113 YISMKRTVCLNIXLFVCVYTCPDTINDQYTNLQMFARGRLPIYIRTHLMCCCVPNIF 283
           Y+     VC++I + V +Y C  T      ++ M     + +YI TH+  C   N++
Sbjct: 60  YVYTYTYVCVHIHICVHIYLCMYTHTYMCAHIHMCVYTYIYVYIYTHIHICVHINMY 116


>AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44936 fis, clone BRAMY3018121. ).
          Length = 175

 Score = 29.9 bits (64), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +2

Query: 161 CVYTCPDTINDQ------YTNLQMFARGRLPIYIRTHLMCCCVPNIFKF 289
           C++TC DT          YT++ M    +  IY + H+  C   NI+ +
Sbjct: 20  CIHTCTDTHTHMHTHTLTYTHIHMHTHTQTHIYTQAHIHSCTQINIYTY 68


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,934,807
Number of Sequences: 237096
Number of extensions: 1812043
Number of successful extensions: 2754
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2743
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)