Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00985
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.6  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +3

Query: 504 IYIFIRLCENYIIKPISFTYNLKYSCKANSCSMALSARVFMLRK 635
           +++F  L E  ++K +     L+Y  + +  S   S R  ++ K
Sbjct: 271 MFVFAALGEFVVVKVLDLRSQLEYDLQTSIMSRHYSTRAIVIEK 314


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 60   YYDNPYGEDPVTH 98
            Y +N +G D VTH
Sbjct: 1347 YVENTFGHDTVTH 1359


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +1

Query: 106 AILYFNEANCMFKYXSFCMCVYMSRHDQRPIHKPTNVRAR 225
           +IL  N   C +     C+ V MSR   R    P   +AR
Sbjct: 111 SILRINRNRCQYCRLKKCIAVGMSRDAVRFGRVPKREKAR 150


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 267 QQHIRCVRI*IGSLPRANICRFVYWSL 187
           ++HI+ V       P  NIC+ VY SL
Sbjct: 19  RRHIQNVHTRPSKEPICNICKRVYSSL 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,153
Number of Sequences: 438
Number of extensions: 4637
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)