Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00985
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45570.1 68418.m05596 Ulp1 protease family protein contains P...    27   9.2  
At5g28235.1 68418.m03421 Ulp1 protease family protein contains P...    27   9.2  
At2g17780.1 68415.m02059 expressed protein contains Pfam profile...    27   9.2  

>At5g45570.1 68418.m05596 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At4g08430, At5g28235
          Length = 921

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 289 KFKYIXNTTTHKVCTNIDRKSAAREHL 209
           K+ Y+ N+T  ++ T++   S+  EHL
Sbjct: 609 KYPYVGNSTVKRIITDVPSSSSVPEHL 635


>At5g28235.1 68418.m03421 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; simlar to At4g08430, At5g45570
          Length = 568

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 289 KFKYIXNTTTHKVCTNIDRKSAAREHL 209
           K+ Y+ N+T  ++ T++   S+  EHL
Sbjct: 332 KYPYVGNSTVKRIITDVPSSSSVPEHL 358


>At2g17780.1 68415.m02059 expressed protein contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 416

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 125 KRTVCLNIXLFVCVYTCPDTINDQYTNLQMFARGRLPIYIRTHLMCCC 268
           K  +  ++ L  C YTC   I  +         G +  ++ +HLMCCC
Sbjct: 336 KNLIVYSLILSCCCYTC--CIRKKLRKTLNITGGCIDDFL-SHLMCCC 380


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,312,616
Number of Sequences: 28952
Number of extensions: 278083
Number of successful extensions: 483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)