Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00984
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   3.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.5  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   6.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   6.0  
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    26   6.0  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    25   7.9  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   7.9  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   7.9  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    25   7.9  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 435 KKFSSLNASWIFLKT 391
           KK+ SLN +W FLKT
Sbjct: 15  KKYDSLNGTWDFLKT 29


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 379 QHFKYDRRQSRNAYSLY 329
           QH+K D    RNAY+LY
Sbjct: 250 QHYKLDVNSLRNAYNLY 266


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 136 YQ*TVSIICNFCSIYKNNSFRCPPIIP*LFLNSFSYLIF 20
           Y   ++   ++ SIY N+    PP +P  F++ ++Y  +
Sbjct: 431 YNQNINSSIDYSSIYSNDVPAIPPNVPYTFVDPYTYACY 469


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 291 FTLSCFKTTPLDTCYYFYLYTK**HL*YSCCLLF*NQQVLAHFRSISV 148
           F + C     LD  +YF L++    +   C +++  Q+ L  FR++S+
Sbjct: 204 FQIFCCVLWCLDDYWYFSLFSMFMIIALECSVVWQRQRTLTEFRTMSI 251


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 671 KGKSLHINPYK*CLKFGSINFLRTFSLRSCSVES 570
           K + L + P K CL FG     +T   R+C+ +S
Sbjct: 210 KFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQS 243


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 395 FKNIQDAFNDENFLDYL 445
           FK I  +FN E+FL YL
Sbjct: 273 FKEIDPSFNTEHFLQYL 289


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 18  LKIKYEKEFRNNYGIMGGHLKLLFLYIEQKLQIIDTVYWYN 140
           L + YE  F   +G + G+L    L   QK ++ID + +Y+
Sbjct: 207 LVVLYECAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYYS 247


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 18  LKIKYEKEFRNNYGIMGGHLKLLFLYIEQKLQIIDTV 128
           L++  E +  NN  + G HL+  F +++  L I+DTV
Sbjct: 350 LEVILESDLLNNT-VDGTHLEGSFTFLDNGLTILDTV 385


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 368 LEMLFNDDVFKNIQDAFNDENFLDYLEINN----LQQPVFLNDYPD 493
           LE L   D F+ ++     E FLDYL +NN       P  + D PD
Sbjct: 105 LERLAESDDFEAVKSI--QEFFLDYLVVNNDLASFNIPHIIEDSPD 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,097
Number of Sequences: 5004
Number of extensions: 62644
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)