Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00984
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    30   2.0  
04_03_0199 - 12559351-12559433,12559693-12559827,12560260-125604...    29   2.7  

>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 418 ECILDIFKNVIIKQHFKYDRRQSRNAYSLY 329
           EC+L  F+ + +  HFKY++    + YS +
Sbjct: 277 ECLLTRFQEMSLDYHFKYEQEAGSSVYSFF 306


>04_03_0199 -
           12559351-12559433,12559693-12559827,12560260-12560437,
           12560848-12561389,12561398-12564827
          Length = 1455

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +2

Query: 254 VSNGVVLKHDKVNLSLYDRETKIIHIQTICITRLTSVILEMLFNDDVFKNIQDAFNDENF 433
           V+N    K+    LS  +   K + ++ +  ++L +++L   +N   FK+ QDAF +   
Sbjct: 439 VTNSAYCKYQNGKLSRNEEFEKSL-MKVMSRSKLRTLVLIGQYNHHFFKSFQDAFREAQH 497

Query: 434 LDYLEI 451
           L  L I
Sbjct: 498 LRLLHI 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,338,013
Number of Sequences: 37544
Number of extensions: 305925
Number of successful extensions: 684
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)