Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00984
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)                    28   6.4  
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)               28   6.4  

>SB_52194| Best HMM Match : RVT_1 (HMM E-Value=0.94)
          Length = 472

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = +2

Query: 344 ITRLTSVILEMLFNDDVFKNIQDAFNDENFLDYLEIN 454
           IT LT  I E++ N  V K   D F D+  LDYL IN
Sbjct: 68  ITDLTQYITELV-NRRVRKLSADGFIDDKTLDYLIIN 103


>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
          Length = 535

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 257 SNGVVLKHDKVNL-SLYDRETKIIHIQTICITRLTSVILEMLFNDDVFKNIQDAFNDENF 433
           S  VV+  DK N  +L     K ++ +T     LT  I E++ N  V K   D F D+  
Sbjct: 283 SGVVVMDKDKYNQEALRQLSDKEVYKET---KDLTQYITELV-NRRVRKLSSDGFIDDKT 338

Query: 434 LDYLEINN 457
           LDYL IN+
Sbjct: 339 LDYLIINS 346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,541,796
Number of Sequences: 59808
Number of extensions: 407456
Number of successful extensions: 898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)