Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00984
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical ...    29   3.2  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z12017-7|CAH19088.1|  856|Caenorhabditis elegans Hypothetical
           protein R08D7.6c protein.
          Length = 856

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 438 SKKFSSLNASWIFLKTSSLN-SISSMTDVNLVMHIVCMCIIFVSRS*SDKFTLSCFKTTP 262
           S  F+  +  W+ L+T ++  ++S M  ++L+  I C+C     R  ++ F +   + TP
Sbjct: 422 SHAFAVTHFCWLTLRTDAIRRALSDMERLSLL--IACLCHDIDHRGTTNSFQMQSLQKTP 479

Query: 261 LDTCY 247
           L   Y
Sbjct: 480 LSVLY 484


>Z12017-6|CAE47469.1|  734|Caenorhabditis elegans Hypothetical
           protein R08D7.6b protein.
          Length = 734

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 438 SKKFSSLNASWIFLKTSSLN-SISSMTDVNLVMHIVCMCIIFVSRS*SDKFTLSCFKTTP 262
           S  F+  +  W+ L+T ++  ++S M  ++L+  I C+C     R  ++ F +   + TP
Sbjct: 425 SHAFAVTHFCWLTLRTDAIRRALSDMERLSLL--IACLCHDIDHRGTTNSFQMQSLQKTP 482

Query: 261 LDTCY 247
           L   Y
Sbjct: 483 LSVLY 487



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +2

Query: 524 TRATRIFKHSMFYTRKIRRCRNVGRKS*EN*WNQISNIICTDLCAKIFLYIGESQR 691
           T+ TR+F      T  IR       KS  N +  +   IC   C+    Y G S R
Sbjct: 677 TKYTRVFARRESRTEDIRSSAKARPKSCRNCFKTVRACICKRKCSSNTRYFGSSFR 732


>Z12017-5|CAA78052.2|  859|Caenorhabditis elegans Hypothetical
           protein R08D7.6a protein.
          Length = 859

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 438 SKKFSSLNASWIFLKTSSLN-SISSMTDVNLVMHIVCMCIIFVSRS*SDKFTLSCFKTTP 262
           S  F+  +  W+ L+T ++  ++S M  ++L+  I C+C     R  ++ F +   + TP
Sbjct: 425 SHAFAVTHFCWLTLRTDAIRRALSDMERLSLL--IACLCHDIDHRGTTNSFQMQSLQKTP 482

Query: 261 LDTCY 247
           L   Y
Sbjct: 483 LSVLY 487


>U80025-2|AAD32270.3|  806|Caenorhabditis elegans Hypothetical
           protein F02C9.2 protein.
          Length = 806

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 634 HHLYGFMCKDFPLYWRIA 687
           HHL G  C+D P++W IA
Sbjct: 611 HHLTGVTCEDSPIWWSIA 628


>AC006757-4|AAF60545.1|  610|Caenorhabditis elegans Hypothetical
           protein Y40C7B.5 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +3

Query: 198 NNMNIKDVIILYKDKNNSTYLM 263
           N+  IK++ I+YKDKN+ST ++
Sbjct: 379 NDDIIKEITIIYKDKNDSTIIL 400


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +3

Query: 99  EQKLQIIDTVYWYNQIGQILIENVQALVDFKTINNMNIKDVIILYKDK 242
           E+ ++II  +    +  ++L+E ++ +V    IN + +KDV    +DK
Sbjct: 406 EEDVEIIKPIEQPEKASEVLVEPIKKVVSSIKINGIEVKDVEKTKEDK 453


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/29 (27%), Positives = 22/29 (75%)
 Frame = -2

Query: 241 LSLYKIITSLIFMLFIVLKSTSACTFSIN 155
           +S+Y +I S++ +++++++  S+CT + N
Sbjct: 133 VSIYCVIVSILVIIWLLVQQLSSCTLNFN 161


>U42830-5|AAC48280.2|  437|Caenorhabditis elegans Hypothetical
           protein C53B7.7 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 30  YEKEFRNNYGIMGGHLKLLFLYIEQKLQIIDTVYWYNQIGQILIENVQALV 182
           Y   FR ++       KLLF+Y + + + I+ V +Y+ + Q L  +V+A V
Sbjct: 82  YNINFRRSHICCHFFCKLLFIYYDYQYRFINYVTFYDGMLQPLYYHVEANV 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,922,274
Number of Sequences: 27780
Number of extensions: 340223
Number of successful extensions: 999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)