Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00984
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.53 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.6  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.6  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.6  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 450 ISR*SKKFSSLNASWIFLKTSSLNSISSMTDVNLVMHIVCMCIIFVSRS*SD-KFTLSCF 274
           IS     FS  N    FL+T    S  +   V L+ H   M +IF+  S +D +  L  F
Sbjct: 128 ISSRDSAFSDKNIHVSFLRTVPPYSHQTDVWVELLKHFNYMKVIFIHSSDTDGRALLGRF 187

Query: 273 KTT 265
           +TT
Sbjct: 188 QTT 190


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 408 WIFLKTSSLNSISSMTDVNLVMHIVCMCI---IFVSRS*SDKFTL 283
           WIF    SL + S+M  VNL +    M I   IF+  S +  F L
Sbjct: 71  WIFCAAKSLRTPSNMFVVNLAICDFFMMIKTPIFIYNSFNTGFAL 115


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 3   NWHNNLKIKYEKEFRNNY 56
           N++NN    Y   + NNY
Sbjct: 96  NYNNNYNNNYNNNYNNNY 113


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 3   NWHNNLKIKYEKEFRNNY 56
           N++NN    Y   + NNY
Sbjct: 96  NYNNNYNNNYNNNYNNNY 113


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 537 EFSNIQCFIP 566
           EF+N+QC +P
Sbjct: 599 EFANLQCIVP 608


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 408 WIFLKTSSLNSISSMTDVNLVM 343
           +IFL T SL + S++  +NL +
Sbjct: 75  YIFLSTKSLRTPSNLFVINLAI 96


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 3   NWHNNLKIKYEKEFRNNYGIMGGHLKLLFLYIEQKLQIIDTVYWYNQIGQIL 158
           N HN+++  + K  ++    +  ++  +FL  +QK   +    W NQI  IL
Sbjct: 54  NVHNHIQNIF-KIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHIL 104


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 3   NWHNNLKIKYEKEFRNNYGIMGGHLKLLFLYIEQKLQIIDTVYWYNQIGQIL 158
           N HN+++  + K  ++    +  ++  +FL  +QK   +    W NQI  IL
Sbjct: 37  NVHNHIQNIF-KIIKSTNEKITRYIIRMFLISQQKTSKLKIYKWNNQILHIL 87


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 357 VNLVMHIVCM 328
           VNL+ HI+CM
Sbjct: 289 VNLICHILCM 298


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 408 WIFLKTSSLNSISSMTDVNLVM 343
           +IFL T SL + S++  +NL +
Sbjct: 41  YIFLSTKSLRTPSNLFVINLAI 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,547
Number of Sequences: 438
Number of extensions: 4480
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)