Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00984
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01760.1 68416.m00114 lysine and histidine specific transport...    29   2.3  
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    29   3.0  
At4g28710.1 68417.m04106 myosin heavy chain, putative similar to...    29   3.0  
At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea...    28   6.9  
At1g60140.1 68414.m06775 glycosyl transferase family 20 protein ...    28   6.9  
At1g35150.1 68414.m04359 hypothetical protein                          27   9.1  

>At3g01760.1 68416.m00114 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter [Arabidopsis thaliana] GI:2576361; contains
           Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 479

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 150 QILIENVQALVDFKTINNMNIKDVIILY 233
           Q L+E V A  DF T+ N  +K+ ++LY
Sbjct: 11  QHLVEEVYAFYDFVTLKNFILKEFLLLY 38


>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 6   WHNNLKIKYEKEFRNN--YGIMGGHLKLLFLYIEQKLQIIDTVYWYNQIGQILIENVQAL 179
           W + LK+ Y   F +   Y   G H    F   E+  QI+D ++WY   G ++++     
Sbjct: 688 WKDKLKV-YLAPFLHGARYTSFGRH----FTNPEKLQQIVDRLHWYADDGDMIVDFCCGS 742

Query: 180 VDFKTINNMNIKD 218
            DF  + N  +++
Sbjct: 743 NDFSCLMNAKLEE 755


>At4g28710.1 68417.m04106 myosin heavy chain, putative similar to
           myosin [Arabidopsis thaliana] gi|499047|emb|CAA84066.
          Length = 899

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 293 LSLYDRET-KIIHIQTICITRLTSVILEMLFNDDVFKNIQDAFNDENF-LDYLEINNLQQ 466
           L +Y  E+ K    +  CI  LT+  L+  FN  VFK  QD +N E     Y+E  + Q+
Sbjct: 432 LDIYGFESFKTNSFEQFCIN-LTNEKLQQHFNQHVFKMEQDEYNKEEIDWSYIEFVDNQE 490


>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
            similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
            contains Pfam profiles PF00787: PX domain, PF02194: PXA
            domain
          Length = 1009

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 338  ICITRLTSVILEMLFNDDVFKNIQDAFND 424
            ICI +LT  ILE+L    VF  +QD   D
Sbjct: 972  ICIKQLTFAILELLLR-SVFPELQDLLRD 999


>At1g60140.1 68414.m06775 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein contains Pfam
           profile: PF02358 trehalose-phosphatase
          Length = 861

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -3

Query: 666 KIFAHKSVQMM-FE---IWFH*FS*DFLPTFLQRRIFRV 562
           KIFA K + ++  E   IW H +    LPTFL+RR  RV
Sbjct: 185 KIFADKVMGVINLEEDYIWIHDYHLMVLPTFLRRRFHRV 223


>At1g35150.1 68414.m04359 hypothetical protein
          Length = 459

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 278 HDKVNLSLYDRETKIIHIQTICITRLTSVILEMLFNDDVFKNIQDAFNDEN 430
           +D  NLS   +E K  H    C+TR   +   +  N  + K+ Q+A N +N
Sbjct: 103 NDWRNLSKRLKEHKGSHDHITCMTRRAELESRLQKNKTIDKHAQEAINKDN 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,314,211
Number of Sequences: 28952
Number of extensions: 284408
Number of successful extensions: 705
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)