Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00983
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 75 1e-14
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 44 3e-05
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 34 0.024
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.2
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 28 1.6
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 27 2.1
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 27 2.7
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 2.7
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 74.5 bits (175), Expect = 1e-14
Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Frame = +3
Query: 510 FDPENYSIWYAEYKYPEELAK-VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTIS 686
FDPENYS+W +Y YPE+L + VFM+ NLI G FQRL+ RK F + GE+ ++TI+
Sbjct: 289 FDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTIT 348
Query: 687 GVWVWRRKELV 719
G +V + + V
Sbjct: 349 GAFVIKGHDYV 359
Score = 41.9 bits (94), Expect = 9e-05
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 32 DGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSA 211
D L ++T+LV R+TLAD+ L +VL S + ++ R++ T+ HQ ++ A
Sbjct: 141 DEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDA 200
Query: 212 VVGSLTLCAAP 244
+ L P
Sbjct: 201 ITEPLKFIDQP 211
Score = 39.5 bits (88), Expect = 5e-04
Identities = 15/35 (42%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Frame = +1
Query: 418 SMPKGTFNMDDFKRVYSNED-EAKSIPYFWESLTP 519
S P G+F+++++KRVYSN+D + ++P+F+E P
Sbjct: 257 SAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDP 291
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 17 ALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQ 196
+LK+ + + RT+LV +R TLAD+ S L F ++D R L ++ R+++T+ HQ
Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQ 200
Query: 197 PQV 205
++
Sbjct: 201 AKL 203
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 33.9 bits (74), Expect = 0.024
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 29 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 205
LD L + TF+ + I++AD+ V++ + H++ L L NV RWF + HQ V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186
Query: 206 SAVVGSLTL 232
S+++
Sbjct: 187 MEAANSMSM 195
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 6 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 98
TY PP Y D+FS APS+ + S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 541 PNTNTLRNSLRCS*AVTLLRVCSRG*TKCANRLSHPSAC 657
PN L+ R VTL VC RG + +NR+ C
Sbjct: 175 PNATALKRKSRKVDMVTLCSVCQRGHSPLSNRIVFCDGC 213
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 415 DSMPKGTFNMDDFKRVYSNEDEAKSIPYFWESLTPRTIPFGMPN 546
D P + +DF+ + AK+I Y+W SLT ++ +G N
Sbjct: 126 DRFPSNAGSSNDFEN-----NVAKAIAYYWRSLTHDSLWYGYTN 164
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -1
Query: 700 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 587
+ H P V+ L+ PN + CL IL WN PV+ L
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 415 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 308
RRGPWTP ++ + +L +++ L +H L
Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,662
Number of Sequences: 5004
Number of extensions: 57623
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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