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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00983
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    75   1e-14
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    44   3e-05
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    34   0.024
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   1.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    28   1.6  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    27   2.1  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    27   2.7  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   2.7  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = +3

Query: 510 FDPENYSIWYAEYKYPEELAK-VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTIS 686
           FDPENYS+W  +Y YPE+L + VFM+ NLI G FQRL+  RK  F    + GE+ ++TI+
Sbjct: 289 FDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTIT 348

Query: 687 GVWVWRRKELV 719
           G +V +  + V
Sbjct: 349 GAFVIKGHDYV 359



 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 21/71 (29%), Positives = 36/71 (50%)
 Frame = +2

Query: 32  DGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSA 211
           D  L ++T+LV  R+TLAD+     L     +VL  S  +   ++ R++ T+ HQ ++ A
Sbjct: 141 DEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDA 200

Query: 212 VVGSLTLCAAP 244
           +   L     P
Sbjct: 201 ITEPLKFIDQP 211



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
 Frame = +1

Query: 418 SMPKGTFNMDDFKRVYSNED-EAKSIPYFWESLTP 519
           S P G+F+++++KRVYSN+D  + ++P+F+E   P
Sbjct: 257 SAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDP 291


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 38/63 (60%)
 Frame = +2

Query: 17  ALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQ 196
           +LK+ +  +  RT+LV +R TLAD+   S L   F  ++D   R  L ++ R+++T+ HQ
Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQ 200

Query: 197 PQV 205
            ++
Sbjct: 201 AKL 203


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 29  LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 205
           LD  L + TF+  +  I++AD+ V++ + H++   L       L NV RWF  + HQ  V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186

Query: 206 SAVVGSLTL 232
                S+++
Sbjct: 187 MEAANSMSM 195


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 6   TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 98
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 541 PNTNTLRNSLRCS*AVTLLRVCSRG*TKCANRLSHPSAC 657
           PN   L+   R    VTL  VC RG +  +NR+     C
Sbjct: 175 PNATALKRKSRKVDMVTLCSVCQRGHSPLSNRIVFCDGC 213


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 415 DSMPKGTFNMDDFKRVYSNEDEAKSIPYFWESLTPRTIPFGMPN 546
           D  P    + +DF+      + AK+I Y+W SLT  ++ +G  N
Sbjct: 126 DRFPSNAGSSNDFEN-----NVAKAIAYYWRSLTHDSLWYGYTN 164


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 700 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 587
           + H P  V+ L+    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 415 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 308
           RRGPWTP   ++     + +L   +++ L +H   L
Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,662
Number of Sequences: 5004
Number of extensions: 57623
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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