BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00983 (730 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 75 1e-14 SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 44 3e-05 SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 34 0.024 SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 28 1.2 SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 28 1.6 SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 27 2.1 SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 27 2.7 SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 27 2.7 >SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 409 Score = 74.5 bits (175), Expect = 1e-14 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%) Frame = +3 Query: 510 FDPENYSIWYAEYKYPEELAK-VFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTIS 686 FDPENYS+W +Y YPE+L + VFM+ NLI G FQRL+ RK F + GE+ ++TI+ Sbjct: 289 FDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEASRKYIFGCCVVIGENGDNTIT 348 Query: 687 GVWVWRRKELV 719 G +V + + V Sbjct: 349 GAFVIKGHDYV 359 Score = 41.9 bits (94), Expect = 9e-05 Identities = 21/71 (29%), Positives = 36/71 (50%) Frame = +2 Query: 32 DGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSA 211 D L ++T+LV R+TLAD+ L +VL S + ++ R++ T+ HQ ++ A Sbjct: 141 DEELASKTYLVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDA 200 Query: 212 VVGSLTLCAAP 244 + L P Sbjct: 201 ITEPLKFIDQP 211 Score = 39.5 bits (88), Expect = 5e-04 Identities = 15/35 (42%), Positives = 27/35 (77%), Gaps = 1/35 (2%) Frame = +1 Query: 418 SMPKGTFNMDDFKRVYSNED-EAKSIPYFWESLTP 519 S P G+F+++++KRVYSN+D + ++P+F+E P Sbjct: 257 SAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDP 291 >SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 220 Score = 43.6 bits (98), Expect = 3e-05 Identities = 21/63 (33%), Positives = 38/63 (60%) Frame = +2 Query: 17 ALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQ 196 +LK+ + + RT+LV +R TLAD+ S L F ++D R L ++ R+++T+ HQ Sbjct: 141 SLKIPNELVKDRTYLVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQ 200 Query: 197 PQV 205 ++ Sbjct: 201 AKL 203 >SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases |Schizosaccharomyces pombe|chr 1|||Manual Length = 450 Score = 33.9 bits (74), Expect = 0.024 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Frame = +2 Query: 29 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 205 LD L + TF+ + I++AD+ V++ + H++ L L NV RWF + HQ V Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186 Query: 206 SAVVGSLTL 232 S+++ Sbjct: 187 MEAANSMSM 195 >SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 442 Score = 28.3 bits (60), Expect = 1.2 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +3 Query: 6 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 98 TY PP Y D+FS APS+ + S+S Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287 >SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1|Schizosaccharomyces pombe|chr 3|||Manual Length = 461 Score = 27.9 bits (59), Expect = 1.6 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +1 Query: 541 PNTNTLRNSLRCS*AVTLLRVCSRG*TKCANRLSHPSAC 657 PN L+ R VTL VC RG + +NR+ C Sbjct: 175 PNATALKRKSRKVDMVTLCSVCQRGHSPLSNRIVFCDGC 213 >SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces pombe|chr 2|||Manual Length = 752 Score = 27.5 bits (58), Expect = 2.1 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +1 Query: 415 DSMPKGTFNMDDFKRVYSNEDEAKSIPYFWESLTPRTIPFGMPN 546 D P + +DF+ + AK+I Y+W SLT ++ +G N Sbjct: 126 DRFPSNAGSSNDFEN-----NVAKAIAYYWRSLTHDSLWYGYTN 164 >SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosaccharomyces pombe|chr 3|||Manual Length = 177 Score = 27.1 bits (57), Expect = 2.7 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -1 Query: 700 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 587 + H P V+ L+ PN + CL IL WN PV+ L Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119 >SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr 1|||Manual Length = 411 Score = 27.1 bits (57), Expect = 2.7 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = -1 Query: 415 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 308 RRGPWTP ++ + +L +++ L +H L Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,899,662 Number of Sequences: 5004 Number of extensions: 57623 Number of successful extensions: 162 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 161 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 343230174 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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