Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00983
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 66 4e-11
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 54 9e-08
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 44 9e-05
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 40 0.003
02_05_1202 + 34932291-34933027,34933297-34933774 35 0.076
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.41
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 30 1.6
06_01_0611 + 4420873-4422207 30 1.6
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 29 5.0
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766 29 5.0
03_03_0142 + 14800317-14801240 29 5.0
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 28 6.6
07_03_0803 - 21620754-21620955,21621718-21621780,21622172-216222... 28 8.7
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 28 8.7
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 65.7 bits (153), Expect = 4e-11
Identities = 25/69 (36%), Positives = 42/69 (60%)
Frame = +3
Query: 510 FDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 689
+DPE YS+W+ +YKY +E F++ N + G QR+D RK AF + + G + + G
Sbjct: 303 YDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKG 362
Query: 690 VWVWRRKEL 716
+W++R E+
Sbjct: 363 LWLFRGPEI 371
Score = 65.7 bits (153), Expect = 4e-11
Identities = 25/69 (36%), Positives = 42/69 (60%)
Frame = +3
Query: 510 FDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 689
+DPE YS+W+ +YKY +E F++ N + G QR+D RK AF + + G + + G
Sbjct: 868 YDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKG 927
Query: 690 VWVWRRKEL 716
+W++R E+
Sbjct: 928 LWLFRGPEI 936
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/86 (30%), Positives = 45/86 (52%)
Frame = +2
Query: 8 LLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTV 187
L +L L+ HL + T+LV +TLAD+++ L F ++ S S +V+R+F T+
Sbjct: 143 LKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTM 202
Query: 188 AHQPQVSAVVGSLTLCAAPPTYALKS 265
+QP V+G + + P K+
Sbjct: 203 VNQPNFKKVLGDVKQAESVPPVQKKA 228
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/86 (29%), Positives = 45/86 (52%)
Frame = +2
Query: 8 LLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTV 187
L +L L+ HL + T+LV +TLAD+++ L F ++ + S +V+R+F T+
Sbjct: 704 LKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTM 763
Query: 188 AHQPQVSAVVGSLTLCAAPPTYALKS 265
+QP V+G + + P K+
Sbjct: 764 VNQPNFKKVMGDVKQADSVPQVQKKA 789
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/88 (30%), Positives = 46/88 (52%)
Frame = +2
Query: 2 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFL 181
+ L +L L+ HL + T+LV +TLAD+++ L + F +L S S +V+R+F
Sbjct: 156 TSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFW 215
Query: 182 TVAHQPQVSAVVGSLTLCAAPPTYALKS 265
T+ +QP V+G + P K+
Sbjct: 216 TMVNQPNFKKVIGDFKQAESVPPVQKKA 243
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +3
Query: 510 FDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 689
+DPE YS+W+ +YKY +E F++ N +R+D RK AF + + G + G
Sbjct: 320 YDPEGYSLWFCDYKYNDENTVSFVTMN------KRMDLCRKYAFGKMLVIGSTPPFKVKG 373
Query: 690 VWVWRRKEL 716
+W++R +++
Sbjct: 374 LWLFRGQDI 382
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 44.4 bits (100), Expect = 9e-05
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +2
Query: 2 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFL 181
S+ AA LDG+L +RTFLV+ +++AD++V+S L Q N+ RWF
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNLAGTGQRWESLRRSKKYQNLVRWFN 152
Query: 182 TVAHQPQ-----VSAVVGSLTLCAAP 244
++A VSA VG + +P
Sbjct: 153 SIADYSDTLDEVVSAYVGKRGIGKSP 178
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 2 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWF 178
S+ A +DG+L++RTFLV +T+AD+ V+S L Q N+ RWF
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNLAGIGQRWESLRKSKKYQNLVRWF 149
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 34.7 bits (76), Expect = 0.076
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 5 DLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLH--AFQHVLDPSVRSSLINVQRWF 178
+L AAL L+ HL +L + +TLADV +F+TL+ H L R L+
Sbjct: 262 ELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLVRFDLVYHSLFRCTRRKLVEYASLH 321
Query: 179 LTVAHQPQVSAVVGSLTLCAAPPTY 253
Q+ V G+ + A Y
Sbjct: 322 AYTRDIYQMPGVAGTCDMAAIADGY 346
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.41
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 640 SHPSACLVKTTIPPSPECGCGAERSSC 720
SH C+ K PP P CGC +C
Sbjct: 206 SHAFVCVCKPAPPPPPPCGCSGGHGNC 232
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 634 RLSHPSACLVKTTIPPSPECGCGAERS 714
R HP++ LV+ T PP P G G S
Sbjct: 30 RAGHPTSALVRATAPPPPATGGGGSSS 56
>06_01_0611 + 4420873-4422207
Length = 444
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 148 FVADKRSAL-----VPDRRPPATSVGRRRLAHALCGSSYIRPKK 264
+V D+ +AL P RRPPA S RRRLA + C + KK
Sbjct: 279 YVMDEHAALRVAVRTPKRRPPARSRSRRRLALSECDFAGSASKK 322
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 45 SHAPSLLPRESHLPMSLSS 101
+H PSL+P ESHL S+SS
Sbjct: 498 NHQPSLVPNESHLNNSVSS 516
>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
Length = 310
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -1
Query: 424 ASSRRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 266
A ++GPWTP QE P +W A+ +T + C SC + + L PG
Sbjct: 10 AEVKKGPWTPEEDLMLVAYVQEH-GPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPG 64
>03_03_0142 + 14800317-14801240
Length = 307
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -1
Query: 415 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 266
++GPWTP QE P +W A+ T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDMVLASYVQEH-GPGNWRAVPPRTGLLRCSKSCRLRWTNYLRPG 64
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 121 PARARPERPFVADKRSALVPDRRPPATSVGRRRLA-HALCGSSYIRPKKY 267
PA ARP + VA + + PP T GR+ L+ AL G P+++
Sbjct: 43 PAAARPLQAMVARAKCSSPTGDAPPCTECGRQFLSWKALFGHMRCHPERH 92
>07_03_0803 -
21620754-21620955,21621718-21621780,21622172-21622250,
21623312-21623424,21623500-21623798
Length = 251
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = -1
Query: 247 RRSRTERERADDGRHLWLVGD--GQEPTLN--VYQRRTDARV*HVLESMQQCTEDNDIGK 80
R R R +G H LV D Q+P + ++ R DA L +Q+CT I
Sbjct: 64 RGERKSLNRNHEGGHQRLVKDYFSQDPIYSDKQFRARRDASSRQGLSPLQKCTAAIRILA 123
Query: 79 CDSLGN 62
C SLG+
Sbjct: 124 CGSLGD 129
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 124 ARAR-PERPFVADKRSA---LVPDRRPPATSVGRRR 219
+RAR P PF + RS+ PDRRPP T R R
Sbjct: 28 SRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRSRSR 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,637,573
Number of Sequences: 37544
Number of extensions: 451006
Number of successful extensions: 1402
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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