Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00983
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  81   1e-15
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 32   0.41 
SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)               29   2.9  
SB_54539| Best HMM Match : Pentaxin (HMM E-Value=3.6)                  28   6.7  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    28   6.7  
SB_54573| Best HMM Match : Bacterial_GLE1 (HMM E-Value=8.4)            28   8.9  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   8.9  
SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)                28   8.9  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 33/62 (53%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
 Frame = +3

Query: 510 FDPENYSIWYAEYK--YPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTI 683
           FD E YS+W+ EYK  Y ++L  VFM+CNL+ GM QRL+K+ K  F S+C+FGE++N +I
Sbjct: 29  FDKEGYSLWFLEYKEEYEKDLGMVFMACNLVGGMIQRLEKLVKNGFGSICIFGENHNCSI 88

Query: 684 SG 689
           +G
Sbjct: 89  AG 90



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/27 (62%), Positives = 24/27 (88%), Gaps = 1/27 (3%)
 Frame = +1

Query: 433 TFNMDDFKRVYSNED-EAKSIPYFWES 510
           + N+D +K+VYSNED E+K+IPYFWE+
Sbjct: 2   SMNLDAWKKVYSNEDTESKAIPYFWEN 28


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +2

Query: 5   DLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 109
           D+   + +L+  LL +TFLV ER+TLAD+ V   L
Sbjct: 111 DVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145


>SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)
          Length = 246

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 707 SAPHPHSGDGGIVVFTKQADGCESLFAHF 621
           S PHP  GDGG ++   + +G E  ++ F
Sbjct: 138 SRPHPRQGDGGKLLIEDELNGVEYSYSFF 166


>SB_54539| Best HMM Match : Pentaxin (HMM E-Value=3.6)
          Length = 396

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 278 ANSWYFLGRM*EEPHRA*ASRRRPTLVAGGRRSGTNAERLSATNGRSGLAR 126
           A  WY +G++  +P +   ++R P    G   SGT  +   A +GR   +R
Sbjct: 333 AKDWYEIGQVLTDPKKF--NKREPATCKGPIASGTQGDYSGARSGRRKSSR 381


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 49   THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 180
            T  P +R +HT     L+     +PA+ RP+ P  A    K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627


>SB_54573| Best HMM Match : Bacterial_GLE1 (HMM E-Value=8.4)
          Length = 171

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 726 AGTRAPFGATPTLRRWWNCCLHQTG 652
           AG + P     TLRRW   C+ Q G
Sbjct: 81  AGEKRPQTTADTLRRWIKSCMEQAG 105


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 40  SSHTHLPC--YRENHTCRCHCLQYT 108
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)
          Length = 366

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 513 DPENYS----IWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFA 644
           DP+NY+    +W  E +Y   + + F S +L     Q +D    +AFA
Sbjct: 248 DPDNYNPDQVVWRVELRYHHSIIQQFASGSLDVRTGQAIDTRSFEAFA 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,967,985
Number of Sequences: 59808
Number of extensions: 495654
Number of successful extensions: 1307
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)