BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00982 (534 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 107 7e-24 AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 30 0.91 Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.1 Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 2.1 Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 2.1 V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 2.1 J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 2.1 AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 2.1 Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical p... 29 2.8 U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 29 2.8 Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 28 3.7 Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 28 4.8 Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.8 Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 28 4.8 Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 28 4.8 Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 28 4.8 U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical pr... 28 4.8 U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 28 4.8 U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 28 4.8 Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical pr... 27 6.4 AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 27 6.4 AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 27 6.4 AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical ... 27 6.4 DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 27 8.5 DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 27 8.5 AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical ... 27 8.5 AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 27 8.5 AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 27 8.5 AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 27 8.5 >AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal protein, small subunitprotein 10 protein. Length = 149 Score = 107 bits (256), Expect = 7e-24 Identities = 49/80 (61%), Positives = 60/80 (75%), Gaps = 1/80 (1%) Frame = +1 Query: 25 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 204 M +PK + IYEYLF EGV VAKKD++A H +E + NL+VIK ++SL SR VKEQF Sbjct: 1 MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60 Query: 205 AWRHFYWYLTNEGIEYL-EY 261 AWRH+YWYLT+ GI YL EY Sbjct: 61 AWRHYYWYLTDAGILYLREY 80 Score = 41.9 bits (94), Expect = 3e-04 Identities = 31/82 (37%), Positives = 39/82 (47%) Frame = +3 Query: 252 LRIFLHLPPEIVPATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 431 LR +L LP EIVPAT+K R V P A DR AYR +K Sbjct: 77 LREYLALPAEIVPATIKTKPREIRVPHED-RAPRAAQGEKGDREAYRT----------EK 125 Query: 432 KADVGPGSADLEFKGGYGRGRP 497 + GPG A + ++ G+GRG P Sbjct: 126 VTEAGPGGAPV-YRAGFGRGAP 146 >AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical protein Y37H9A.3 protein. Length = 792 Score = 30.3 bits (65), Expect = 0.91 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAP 422 G V RP APAR A + R PAAP P Sbjct: 33 GRVSRPAAPARGAPPAARGRPAPAAPANVP 62 >Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical protein ZK863.2 protein. Length = 330 Score = 29.1 bits (62), Expect = 2.1 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 491 GP G P AP E S R+ ++PG P GP D GG G G Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196 >Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical protein ZK863.2 protein. Length = 330 Score = 29.1 bits (62), Expect = 2.1 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 491 GP G P AP E S R+ ++PG P GP D GG G G Sbjct: 146 GPDGNPGAPGNDGEAGSPGTRSISSPG--PAGPAGPPGPPGPDGAPGGGSGPG 196 >Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein W01B6.7 protein. Length = 301 Score = 29.1 bits (62), Expect = 2.1 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 500 GP G P +PA + A PA P A GPG +GG G PA Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223 >V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caenorhabditis elegansgene Col-2 coding for a collagen. ). Length = 301 Score = 29.1 bits (62), Expect = 2.1 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 500 GP G P +PA + A PA P A GPG +GG G PA Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223 >J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans (nematode)collagen 2 (col-2) gene, complete cds. ). Length = 301 Score = 29.1 bits (62), Expect = 2.1 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 500 GP G P +PA + A PA P A GPG +GG G PA Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223 >AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen structural gene, probabledorsal and ventral cuticle component, from embryo to adult,but maximal in dauer (28.0 kD) (col-2) protein. Length = 301 Score = 29.1 bits (62), Expect = 2.1 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 500 GP G P +PA + A PA P A GPG +GG G PA Sbjct: 168 GPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASEQGGPGEPGPA 223 >Z81038-13|CAB02755.1| 971|Caenorhabditis elegans Hypothetical protein C25A1.10a protein. Length = 971 Score = 28.7 bits (61), Expect = 2.8 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 345 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 467 + D+ + S++D + ++TPA P KKA+ S+D E Sbjct: 432 KADSSSDSSDDEAPAKKTPAKAAPKPASKKAESSSDSSDDE 472 Score = 28.3 bits (60), Expect = 3.7 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 345 RPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFK 473 + D+ + S++D + ++TPA P KKA+ S+D E K Sbjct: 279 KADSSSDSSDDEAPAKKTPAKAAPKPVAKKAESSSDSSDDEKK 321 >U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 65, isoform a protein. Length = 1702 Score = 28.7 bits (61), Expect = 2.8 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 468 IQDQLSLDQHQPFYHEVQHQGQQE 397 +Q+Q + Q Q F H+ QHQ QQE Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206 >Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical protein B0024.2 protein. Length = 297 Score = 28.3 bits (60), Expect = 3.7 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Frame = +3 Query: 327 RRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGG-YGRGRPAS 503 R GP GRP P R + + PA G A H + D PG K G GRG P + Sbjct: 165 RPGPDGRPGQPGRKGNNGRPGQ--PAPQGNAGHPGR-DGEPGQPGNPGKDGRKGRGHPGT 221 >Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical protein T23F6.4 protein. Length = 872 Score = 27.9 bits (59), Expect = 4.8 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 461 G +P A ++ A+D SAY+RT H +K + PG +D Sbjct: 82 GDANKPRAWSKYAKDSSAYKRT--------HGEKEEANPGKSD 116 >Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical protein C15A11.6 protein. Length = 316 Score = 27.9 bits (59), Expect = 4.8 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = +3 Query: 330 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 497 +GP G P APA+ PA +P A PGS G GRG P Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206 >Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical protein C15A11.5 protein. Length = 316 Score = 27.9 bits (59), Expect = 4.8 Identities = 19/56 (33%), Positives = 22/56 (39%) Frame = +3 Query: 330 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 497 +GP G P APA+ PA +P A PGS G GRG P Sbjct: 153 KGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSPGK--SGQRGRGLP 206 >Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical protein C29F4.1 protein. Length = 299 Score = 27.9 bits (59), Expect = 4.8 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = +3 Query: 333 GPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGS 455 GP G+P AP + D P P P AD PG+ Sbjct: 225 GPQGQPGAPGQPGHDGQPGAPGPKGPNGNPGAPGADGNPGA 265 >Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical protein C09G5.4 protein. Length = 323 Score = 27.9 bits (59), Expect = 4.8 Identities = 17/57 (29%), Positives = 23/57 (40%) Frame = +3 Query: 330 RGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRPA 500 +GP G+P P + A R PA AP A PG A + +G P+ Sbjct: 152 QGPNGQPGHPGQGGSQGPAGPRGPAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGPS 208 >U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical protein C41G11.4b protein. Length = 514 Score = 27.9 bits (59), Expect = 4.8 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = +1 Query: 187 YVKEQFAWRHFYWYLTNE-GIEYLEYSCTF 273 Y QFAW H YW+ + G ++ TF Sbjct: 77 YAPTQFAWIHSYWWFGGDIGCRLFKFISTF 106 >U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical protein C41G11.4a protein. Length = 493 Score = 27.9 bits (59), Expect = 4.8 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = +1 Query: 187 YVKEQFAWRHFYWYLTNE-GIEYLEYSCTF 273 Y QFAW H YW+ + G ++ TF Sbjct: 77 YAPTQFAWIHSYWWFGGDIGCRLFKFISTF 106 >U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical protein C41G11.4c protein. Length = 557 Score = 27.9 bits (59), Expect = 4.8 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = +1 Query: 187 YVKEQFAWRHFYWYLTNE-GIEYLEYSCTF 273 Y QFAW H YW+ + G ++ TF Sbjct: 77 YAPTQFAWIHSYWWFGGDIGCRLFKFISTF 106 >Z81587-1|CAB04701.1| 340|Caenorhabditis elegans Hypothetical protein T06G6.1 protein. Length = 340 Score = 27.5 bits (58), Expect = 6.4 Identities = 14/46 (30%), Positives = 26/46 (56%) Frame = +1 Query: 217 FYWYLTNEGIEYLEYSCTFLLKLCLQHLSAQYVQRQYAVALLVVLM 354 +++YLTN Y +S TF +L + S Y QY +A+ ++++ Sbjct: 114 YFYYLTNYFSTYSVFSLTF-DRLISHYKSKYYHMHQYFIAISLLVL 158 >AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical protein Y39A1B.3 protein. Length = 1499 Score = 27.5 bits (58), Expect = 6.4 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = +3 Query: 288 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 431 P T+ S RT + R PA+S ED S PAAP A K Sbjct: 1432 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1479 >AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage compensation protein protein. Length = 1455 Score = 27.5 bits (58), Expect = 6.4 Identities = 18/48 (37%), Positives = 21/48 (43%) Frame = +3 Query: 288 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDK 431 P T+ S RT + R PA+S ED S PAAP A K Sbjct: 1388 PTTMSGSSRTTSRAANSRRRAPPPAQSDEDDSDSDDAPAAPRSAARRK 1435 >AC024808-5|AAK29931.1| 789|Caenorhabditis elegans Hypothetical protein Y53G8AM.8 protein. Length = 789 Score = 27.5 bits (58), Expect = 6.4 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 321 TVRRGPVGRPDAPARSAEDRSAYRRTPAA 407 T+ PVGR ++ ARS ++ SA R+ P + Sbjct: 8 TIENTPVGRGNSGARSHKEPSAKRKKPTS 36 >DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related alternative variant b protein. Length = 482 Score = 27.1 bits (57), Expect = 8.5 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +3 Query: 270 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 440 L P+I P AT RS +R V+ P APA + ++++A R A G A + + Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380 Query: 441 VGPGSADLEFK 473 V PG+ K Sbjct: 381 VNPGTPSTTIK 391 >DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related alternative variant a protein. Length = 507 Score = 27.1 bits (57), Expect = 8.5 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +3 Query: 270 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 440 L P+I P AT RS +R V+ P APA + ++++A R A G A + + Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380 Query: 441 VGPGSADLEFK 473 V PG+ K Sbjct: 381 VNPGTPSTTIK 391 >AF078792-2|AAC26946.1| 512|Caenorhabditis elegans Hypothetical protein Y40D12A.2 protein. Length = 512 Score = 27.1 bits (57), Expect = 8.5 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +1 Query: 109 APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 240 AP ++ +PNL + ++S GY+ + FYWY+ +E Sbjct: 16 APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57 >AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein 102 protein. Length = 460 Score = 27.1 bits (57), Expect = 8.5 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Frame = +3 Query: 276 PEIVPATLKRSVRTETVRRGPVGR--PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGP 449 PE PA + P G PDA A + E +A PAA G + A P Sbjct: 365 PEAAPAEAAPAAEGAGGGAEPAGAAAPDAAAAAPEAAAAPEAAPAAEGAGGGAEPAGAAP 424 Query: 450 GSADLEFKGGYGRGRP 497 +A +G G P Sbjct: 425 EAAAAAPEGAGGGEAP 440 >AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting protein for xenopusklp2)-like protein 1, isoform b protein. Length = 482 Score = 27.1 bits (57), Expect = 8.5 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +3 Query: 270 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 440 L P+I P AT RS +R V+ P APA + ++++A R A G A + + Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380 Query: 441 VGPGSADLEFK 473 V PG+ K Sbjct: 381 VNPGTPSTTIK 391 >AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting protein for xenopusklp2)-like protein 1, isoform a protein. Length = 507 Score = 27.1 bits (57), Expect = 8.5 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +3 Query: 270 LPPEIVP-ATLKRS--VRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD 440 L P+I P AT RS +R V+ P APA + ++++A R A G A + + Sbjct: 323 LTPKIRPIATANRSSILRMNVVK--PTVPAPAPADAQQNKAASRPAVPAGGAARNRQPLR 380 Query: 441 VGPGSADLEFK 473 V PG+ K Sbjct: 381 VNPGTPSTTIK 391 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,807,806 Number of Sequences: 27780 Number of extensions: 242388 Number of successful extensions: 941 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 860 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 937 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1060113800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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