Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00982
(534 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont... 110 5e-25
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ... 107 6e-24
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont... 103 6e-23
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi... 30 0.84
At5g43000.1 68418.m05244 hypothetical protein 29 1.9
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein... 28 3.4
At5g36210.1 68418.m04365 expressed protein 27 5.9
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar... 27 7.9
At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containi... 27 7.9
At3g01740.1 68416.m00111 expressed protein 27 7.9
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 27 7.9
>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
contains similarity to 40S ribosomal protein S10
Length = 180
Score = 110 bits (265), Expect = 5e-25
Identities = 46/77 (59%), Positives = 62/77 (80%)
Frame = +1
Query: 25 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 204
M++ + NR I +YLFKEGV+ AKKD++ P+H +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 205 AWRHFYWYLTNEGIEYL 255
AW H+YW+LTNEGI++L
Sbjct: 61 AWMHYYWFLTNEGIDFL 77
Score = 39.1 bits (87), Expect = 0.002
Identities = 34/91 (37%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +3
Query: 240 GY*ILRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS-----AEDRSAYRRTP 401
G LR +L+LP EIVPATLK+ + G G RP P R DR YR P
Sbjct: 73 GIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGP 132
Query: 402 AAPGVAPHDKKADVGPGSADLEFKGGYGRGR 494
+ G + KA P F+GG G R
Sbjct: 133 KSGG--EYGDKAG-APADYQPGFRGGAGGAR 160
>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
Length = 177
Score = 107 bits (256), Expect = 6e-24
Identities = 47/77 (61%), Positives = 61/77 (79%)
Frame = +1
Query: 25 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 204
M++ + NR I +YLFKEGV AKKD++ PKH ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 205 AWRHFYWYLTNEGIEYL 255
AW H+YW+LTNEGIE+L
Sbjct: 60 AWMHYYWFLTNEGIEFL 76
Score = 40.3 bits (90), Expect = 8e-04
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = +3
Query: 240 GY*ILRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAP 410
G LR +L+LP ++VPATLK+S + GP G R P RS DR + R
Sbjct: 72 GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRG 131
Query: 411 GVAPHDKKADVGPGSADLEFKGGYGR 488
G D+K P F+GG GR
Sbjct: 132 GPRGGDEKGG-APADFQPSFQGGGGR 156
>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
contains similarity to 40S ribosomal protein S10
Length = 179
Score = 103 bits (248), Expect = 6e-23
Identities = 46/77 (59%), Positives = 60/77 (77%)
Frame = +1
Query: 25 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 204
M++ + NR I +YLFKEGV AKKD++ KH ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 205 AWRHFYWYLTNEGIEYL 255
AW H+YW+LTNEGIE+L
Sbjct: 60 AWMHYYWFLTNEGIEFL 76
Score = 37.1 bits (82), Expect = 0.007
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Frame = +3
Query: 240 GY*ILRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA------EDRSAYRR 395
G LR +L+LP ++VPATLK+S + GP G R P DR YR
Sbjct: 72 GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRA 131
Query: 396 TPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 491
P A G +K P F+G G+GRG
Sbjct: 132 GPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164
>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 654
Score = 30.3 bits (65), Expect = 0.84
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 130 EKIPNLQVIKAMQSLKSRGYVKEQFAWR--HFYWYLTNEGIEYLEYSCTFLLKLC 288
++IP+ ++ L R Y FA + Y+ + N G+ +Y+ F+LK C
Sbjct: 59 DEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKAC 113
>At5g43000.1 68418.m05244 hypothetical protein
Length = 282
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 220 YWYLTNEGIEYLEYSCTFLLKLCLQHL---SAQYVQRQYAVALL 342
+W TN+G Y +LL LC+ H+ + YV ++ + LL
Sbjct: 81 FWLYTNDGSLYWHTLNAYLLMLCIVHVIGSTISYVSHKHYLVLL 124
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC domain protein NAM GB: AAD17313
GI:4325282 from [Arabidopsis thaliana]
Length = 429
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 112 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 201
P HT ++ IP+L +I+ + + K++ K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362
>At5g36210.1 68418.m04365 expressed protein
Length = 676
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 22 KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 120
K++ P Q+R IYE L K+G+ VA +Y +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634
>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
arogenate dehydrogenase GI:16903098 from [Arabidopsis
thaliana]; contains Pfam profile: PF02153: prephenate
dehydrogenase
Length = 640
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 117 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 31
LR I+ FG++ E LI+ +LF H
Sbjct: 53 LRIAIIGFGNYGQFLAETLISQGHILFAH 81
>At3g04750.1 68416.m00511 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 661
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 184 GYVKEQFAWR--HFYWYLTNEGIEYLEYSCTFLLKLCLQHLS 303
GY K+ F+ Y+ + ++GIE EY+ LL +C HLS
Sbjct: 206 GYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLL-VCCGHLS 246
>At3g01740.1 68416.m00111 expressed protein
Length = 126
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -3
Query: 358 GASGRPTGPRRTVSVRTERLSVAGTISGGRCKNIL-SIQYPHWL 230
GAS P G T +++ + A T+ G IL YP WL
Sbjct: 35 GASDAPKGSSLTKEIKSTTVVGANTLKDGSDPKILPDSDYPDWL 78
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 226 YLTNEGIEYLEYSCTFLLKLCLQHLSAQYVQRQYAVALLVVL 351
Y N + +SC + + +C+ S V +QY+ LVVL
Sbjct: 227 YAANHKKLWTRFSCGYSMHVCMDFESKSLVLQQYSDGPLVVL 268
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,003
Number of Sequences: 28952
Number of extensions: 215160
Number of successful extensions: 626
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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