Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00979
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    71   2e-13
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    29   0.69 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    28   1.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   2.1  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   2.8  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    26   6.4  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    26   6.4  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   8.5  

>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = +3

Query: 6   IEQYFGGTLDVELVC--SEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKM 179
           +++   G L   + C  +E  E P+ S ++FL L C IS    Y+  G+   + + I+K 
Sbjct: 205 VQKNMAGKLLSTMKCDENEVQEQPSISHDTFLSLPCHISMHTSYMTQGILEGLTQKISKH 264

Query: 180 SQTLGRDAVYTKTSKISRLPAYLTVN 257
           S  L RDA+Y+K S+ISRLP YLTVN
Sbjct: 265 SDVLNRDAMYSKISRISRLPNYLTVN 290



 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 28/51 (54%), Positives = 37/51 (72%)
 Frame = +2

Query: 257 FVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELE 409
           FVRFY+K      AKIL+ VKFP +LD  E CTPEL ++L P+R+K +E+E
Sbjct: 291 FVRFYWKASIGKKAKILRKVKFPFELDAVEFCTPELSQKLIPVRDKLREIE 341



 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 531 LLPAAGVLTHRGRSSSSGHYVAWVARG---AGWLRCXXXXXXXXXXXXXLKLSGGSDWHC 701
           L    GVL+H G S+SSGHY AW+      A W R                L GG +   
Sbjct: 396 LYDLVGVLSHAGASASSGHYQAWIRNSNNRAEWFRFNDAKVSIVPAEKIETLDGGGEADS 455

Query: 702 AYLLLYGPK 728
           AY+LLY  K
Sbjct: 456 AYILLYKAK 464


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 546 GVLTHRGRSSSSGHYVAWVARGAG-WLR 626
           GVL H G S+ SGHY ++     G WL+
Sbjct: 375 GVLVHAGGSTRSGHYYSFCKSSNGVWLK 402


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 8/20 (40%), Positives = 17/20 (85%)
 Frame = +3

Query: 549 VLTHRGRSSSSGHYVAWVAR 608
           +++H+G S+ +GHYVA++ +
Sbjct: 718 IISHKGSSAHAGHYVAFIRK 737


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +3

Query: 18  FGGTLDVELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHIT-KMSQTLG 194
           FGG LD      E   P +  EES    +   SQ +K   +   +   E  T K+  ++G
Sbjct: 2   FGGELDDAFGVFEGKVPKSLKEESKNSQNSQNSQKIKRTLTDKNASNQEQGTKKLESSVG 61

Query: 195 RDAVYTKTSKISRL 236
                TK +KI  L
Sbjct: 62  EQESATKRAKIENL 75


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 344 ELCTPELQERLTPMRNKFKELEDAKVQSS-LSSGNKSHGDSSKAKKKR 484
           E    +LQE+L+   N   E +D KV+ +  +    S+G+  K KKK+
Sbjct: 8   EATAKDLQEKLSLKENDVVE-DDGKVEENDAAEEGASNGEKKKKKKKK 54


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 275 KEKESINAKILKDVKFPLDLDVYELCTPELQE 370
           KE   I  K    VKFP +LD    CT E  E
Sbjct: 267 KENNDILRKHKTSVKFPTNLDALNSCTMENHE 298


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = +2

Query: 281 KESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGD 460
           K++    + KD+    +  +     P + E L     +  + +  + +SSL+  N+ HG 
Sbjct: 179 KDTAEESVWKDIGLDQETGLSVTAIPIITETLDHAHEQEIKDQSLRFESSLNEANELHGK 238

Query: 461 SSKAKKKR 484
            SK ++++
Sbjct: 239 LSKIQQEQ 246


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 341 YELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAK 475
           Y+    +L  +++ M+N  K + +AK + SLS   K      K K
Sbjct: 339 YQPLINDLDHQISVMQNDEKRINNAKTELSLSLEKKLEAKKQKEK 383


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 549 VLTHRGRSSSSGHYVAWVAR--GAGWLR 626
           V+ H G S+S GHY   V +   +GW R
Sbjct: 441 VVYHHGTSASGGHYTVDVQQLDKSGWFR 468


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = +2

Query: 281 KESINAKI--LKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAK------VQSSLS 436
           K S+ A I  LKD K P +  V+ +   E +   T      KE +DA       V+++ S
Sbjct: 120 KSSVEATISPLKDTKSPSNASVFPIKPTESKTSTTKDSETAKEEDDASSSTTKAVEATTS 179

Query: 437 SGNKSHGDS 463
             + +H D+
Sbjct: 180 KASSAHTDT 188


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 465 ARPRRSVSCPTGSKTXXXXXXXLLPAAGVLTHRGRSSSSGHYVA 596
           ARPRRSVS  TG  +          A G L H  +SS +   VA
Sbjct: 305 ARPRRSVSLATGLNSPSVSKPP-SSATGPLYHSPQSSLTNSSVA 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,865
Number of Sequences: 5004
Number of extensions: 49748
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)