Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00979
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0297 - 20578031-20578080,20578162-20578236,20578317-205784... 66 4e-11
07_03_0204 - 15150854-15151147,15152230-15153689,15154055-151542... 33 0.31
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883... 32 0.54
04_04_0681 - 27225526-27225802,27227163-27227524 31 0.72
10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573 30 1.7
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566... 29 2.9
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 29 2.9
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 29 3.8
03_01_0340 - 2680860-2682197 29 5.1
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 6.7
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 28 6.7
05_06_0033 + 25074301-25074393,25074680-25075203,25076367-250764... 28 6.7
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 28 6.7
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 28 6.7
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 8.8
02_05_0382 + 28491318-28491374,28492031-28492114,28492249-284922... 28 8.8
>01_05_0297 -
20578031-20578080,20578162-20578236,20578317-20578416,
20578476-20578535,20578833-20578907,20578989-20579069,
20579596-20579665,20579769-20579833,20580008-20580116,
20580812-20580876,20580964-20581023,20582008-20582134,
20582215-20582315,20583209-20583316,20583429-20583464,
20583569-20583714,20585555-20585564
Length = 445
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLKLSGGSDWHCAYLLLYGP 725
VLTH+GRS+ SGHYV WV + G W+ LKLSGG DWH AY+ LY
Sbjct: 383 VLTHKGRSADSGHYVGWVKQDDGKWIEFDDDNPSIRKEEEILKLSGGGDWHMAYICLYKA 442
Query: 726 KIL 734
+++
Sbjct: 443 RVI 445
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Frame = +2
Query: 254 EFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDA----KV 421
+FVRF++K + + AKIL+ V +PL+LDVY+ C+ EL+++L R ++ E+A K
Sbjct: 281 QFVRFFWKRESNQKAKILRKVDYPLELDVYDFCSDELKQKLQAPRQMLRDAENAKFGLKA 340
Query: 422 QSSLSSGNKSHGDSSKAKKKRVLPYW 499
Q SS ++ G S + PY+
Sbjct: 341 QGKASSSKENEGSSVSIQVACCDPYF 366
Score = 46.0 bits (104), Expect = 3e-05
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +3
Query: 27 TLDVELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQTLGRDAV 206
T + + C+E+ E ES L C IS DV +L GL+ + + K S +LGR A+
Sbjct: 214 TSETRVHCAESGEESLE-RESVYSLKCHISHDVNHLHEGLKHGLKSELEKASPSLGRTAL 272
Query: 207 YTK 215
YT+
Sbjct: 273 YTR 275
>07_03_0204 -
15150854-15151147,15152230-15153689,15154055-15154266,
15155123-15155275,15155569-15155630,15155733-15155785,
15156380-15156452,15156499-15156619,15156699-15156878,
15157333-15157391
Length = 888
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +2
Query: 353 TPELQERLTPMRNKFKELEDA-KVQSSLSSGNKSHGDS 463
TPE+ ER+T + ++ +LEDA +QS+ + G +S GD+
Sbjct: 87 TPEVLERVTTIESEILQLEDAISIQSNDNLGLRSKGDA 124
>08_02_1345 -
26286448-26286679,26287483-26288038,26288068-26288358,
26288953-26290516
Length = 880
Score = 31.9 bits (69), Expect = 0.54
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 543 AGVLTHRGRSSSSGHYVAWV 602
AGV+ H GR SGH+VA+V
Sbjct: 816 AGVIEHHGRGKDSGHFVAYV 835
>04_04_0681 - 27225526-27225802,27227163-27227524
Length = 212
Score = 31.5 bits (68), Expect = 0.72
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 15 YFGGTLDVELVCSEADEPPTHSEESFLQLSCFISQD 122
++ L E++C E + PP+ S +L CF+S+D
Sbjct: 163 HYCAVLQSEMLCLELEPPPSPSPAPAARLHCFLSED 198
>10_08_0022 - 14225725-14226472,14227997-14228420,14228516-14228573
Length = 409
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +3
Query: 339 CMNSAHRNYKRG*HRCGINSRSWKMRKYNHRLAPVTRVTGTAARPRRSV-SCPTGSKTXX 515
C R+ HR G N WK+R HR A V+ VT A PR+ V CP +
Sbjct: 44 CNKGFQRDQNLQLHRRGHNL-PWKLR---HRAAAVSAVTTAAPAPRKRVYVCPEPTCVHH 99
Query: 516 XXXXXLLPAAGVLTHRGR 569
L G+ H R
Sbjct: 100 DPARALGDLTGIKKHFSR 117
>04_04_0319 +
24355275-24355401,24355504-24355603,24356271-24356618,
24356705-24356745,24356821-24356867,24358043-24358107,
24358186-24358308,24358397-24358534,24358658-24358899,
24358988-24359118,24359363-24359388,24359746-24359882,
24359964-24360376,24360514-24360550,24360643-24360667,
24360755-24360887,24361241-24361340,24362015-24362115,
24362998-24363084
Length = 806
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +2
Query: 251 SEFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSS 430
+E +++ E N +K+ F + +E + ELQERL +++K +L++A
Sbjct: 584 TESAQYHNDEDYRFNDDTVKEKDF--SIGGHESHSTELQERLNALKSKNPQLDEALDADI 641
Query: 431 LSSGNKSHGDSSKAKKKRVL 490
S +H D A+ + +L
Sbjct: 642 DSMEEDTHMDEQHARDEGLL 661
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 359 ELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRV 487
E + L +R + +ELE AK + ++ + S G SS KR+
Sbjct: 447 EAEFPLEDLRERLEELEKAKTEKKKAASSSSSGGSSGPANKRI 489
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWV 602
GV+ H G S SGHYVA+V
Sbjct: 754 GVVEHLGHSMYSGHYVAYV 772
>03_01_0340 - 2680860-2682197
Length = 445
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 347 LCTPELQERLTPMRNKFKELEDAKVQ-SSLSSGNKSHGDSSKAKKKRVLPYWFEN 508
+C+ L ERL+ +RN +E E+ V+ + +G S D K +K +L + ++
Sbjct: 47 VCSTCLMERLSSVRNPAEEEEEEIVEVGTADAGEGSSADHGKLRKTLMLLFQLDD 101
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWV 602
GV+ H G S+SSGH VA+V
Sbjct: 896 GVIEHIGPSTSSGHMVAYV 914
>06_01_0588 -
4224348-4224516,4224674-4224767,4224872-4225490,
4225609-4225734,4225819-4226487,4226728-4226853,
4226940-4227266,4227366-4227439,4228469-4228583,
4228871-4229164
Length = 870
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGAG 617
GVL H G ++ SGHY +V +G
Sbjct: 280 GVLVHAGWNTQSGHYYCFVRTSSG 303
>05_06_0033 +
25074301-25074393,25074680-25075203,25076367-25076442,
25076549-25076641,25077167-25077253,25077338-25078095,
25078447-25078575,25079145-25079265
Length = 626
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGAG-WLRC 629
G + H G S SGHY A+V G W C
Sbjct: 272 GSIVHSGFSPDSGHYYAYVKDAIGRWYCC 300
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 543 AGVLTHRGRSSSSGHYVAWV 602
+ +L H+G +++SGHYVA V
Sbjct: 366 SAILIHKGSAANSGHYVAHV 385
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGAG 617
GVL H G ++ SGHY +V +G
Sbjct: 367 GVLVHAGWNTQSGHYYCFVRTSSG 390
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 108 NRTTGGMTPQSGSGAHQPLSIQAPHP 31
+++TGG P SGS P ++Q P P
Sbjct: 1398 SKSTGGSPPASGSAKGVPPAVQLPSP 1423
>02_05_0382 +
28491318-28491374,28492031-28492114,28492249-28492272,
28492398-28492472,28493083-28493157,28493198-28493290,
28493332-28493409,28493690-28493767,28494084-28494147,
28494474-28494655,28494729-28495064,28495148-28495267,
28495434-28495923,28496240-28496502
Length = 672
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 3 VIEQYFGGTLDVELVCSEADEPPTHSEESFLQLSCFISQ 119
+++Q FGG L +L C E + + E FL LS I Q
Sbjct: 258 IVKQVFGGRLKSKLTCCECGH-CSETYEPFLDLSLEIDQ 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,660,525
Number of Sequences: 37544
Number of extensions: 382056
Number of successful extensions: 1219
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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