Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00979
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 3e-10
SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06) 30 2.2
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41) 29 3.0
SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11) 28 6.8
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048) 28 6.8
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_15810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 62.9 bits (146), Expect = 3e-10
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +3
Query: 120 DVKYLQSGLRSKMAEHITKMSQTLGRDAVYTKTSKISRLPAYLTV 254
+VKY+ +GL+S++ E+ITK S +LGRDA Y K S +SRLPAYLTV
Sbjct: 212 EVKYIHTGLQSRLTENITKKSPSLGRDAQYVKKSMLSRLPAYLTV 256
Score = 44.8 bits (101), Expect = 7e-05
Identities = 27/66 (40%), Positives = 39/66 (59%)
Frame = +2
Query: 236 PCLFDSEFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDA 415
P + VRFY+KEKE++NAKILKD+K + P+ +E+L PM E++D
Sbjct: 251 PAYLTVQLVRFYFKEKEAVNAKILKDLK-------AKAKGPKSEEKLEPM-----EVDDK 298
Query: 416 KVQSSL 433
K +S L
Sbjct: 299 KKESKL 304
>SB_47813| Best HMM Match : HEAT (HMM E-Value=5.9e-06)
Length = 623
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 39 ELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKM--SQTLGRDAVYT 212
+ + A PT +S L C + + +++G+ MAE ITK+ +Q L A T
Sbjct: 238 DFIVDLASRVPTLVLQSISMLMCHLDGESYSMRNGVLGVMAEIITKVLSTQDLDESAKRT 297
Query: 213 KTSKISRLPAYL-TVNSFV 266
+ + RL ++ +N++V
Sbjct: 298 RDHFLDRLEEHIHDMNAYV 316
>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 344 ELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRV 487
E CT E++ P K +D+K++ + G+K G S K V
Sbjct: 484 EKCTAHAAEKIDPKNKDAKSKQDSKLKLGSNKGDKGKGSGSWLANKLV 531
>SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)
Length = 366
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 159 AEHITKMSQTLGRDAVYTKTSKISRLPAYLTVNSFV 266
A+ + + TLGRDA T+ IS LP YL ++ FV
Sbjct: 171 AKELNYILSTLGRDAADTRAGFISALP-YLVMSIFV 205
>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 207 YTKTSKISRLPAYLTVNSFVSTTRRKNLSTLRY*KMLNSLWTWTCMNS 350
YT T+ + P+Y + S+ STT + ++ S ++TC S
Sbjct: 56 YTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTCTTS 103
>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1323
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 278 EKESINAKILKDVKFPL-DLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSH 454
++E K+ K++K D + + + +ER + KE + ++S S NKS
Sbjct: 224 DRERRKKKVKKEIKHKAKDSSESSIDSEDDRERKERKKKNKKEKKHKSKETSSSESNKSS 283
Query: 455 GDSSKAKKKR 484
KAK K+
Sbjct: 284 DSEEKAKSKK 293
>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
Length = 1461
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 320 FPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSL 433
+PL+L V ++ P+ ERL P +F+ DA + L
Sbjct: 1412 YPLELKVDDVVRPQPDERLRPNAAEFRPRRDAAAAARL 1449
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGA 614
GVL H G S +SGHY +V RG+
Sbjct: 341 GVLVHSGYSCNSGHYYCYV-RGS 362
>SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)
Length = 1347
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 320 FPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSL 433
+PL+L V ++ P+ ERL P +F+ DA + L
Sbjct: 1298 YPLELKVDDVVRPQPDERLRPNAAEFRPRRDAAAAARL 1335
>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 359 ELQERLTPMRNKFKELEDAKVQSSLSSGNKSHG 457
ELQ R+T ++NK KELE + S+ + + HG
Sbjct: 85 ELQFRITELKNKLKELEMSLPSSAGITDSIFHG 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,610,672
Number of Sequences: 59808
Number of extensions: 400367
Number of successful extensions: 1198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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