Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00979
(736 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U30888-1|AAB60365.1| 494|Homo sapiens tRNA-Guanine Transglycosy... 101 4e-21
BT007183-1|AAP35847.1| 494|Homo sapiens ubiquitin specific prot... 101 4e-21
BC003556-1|AAH03556.1| 494|Homo sapiens ubiquitin specific pept... 101 4e-21
BC142611-1|AAI42612.1| 593|Homo sapiens NES protein protein. 31 4.3
>U30888-1|AAB60365.1| 494|Homo sapiens tRNA-Guanine
Transglycosylase protein.
Length = 494
Score = 101 bits (241), Expect = 4e-21
Identities = 48/89 (53%), Positives = 63/89 (70%)
Frame = +2
Query: 236 PCLFDSEFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDA 415
P + VRF+YKEKES+NAK+LKDVKFPL LD+YELCTPELQE++ R+KFK+LED
Sbjct: 321 PAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDK 380
Query: 416 KVQSSLSSGNKSHGDSSKAKKKRVLPYWF 502
KV ++ +K SS K+ + P+ F
Sbjct: 381 KVNQQPNTSDKK---SSPQKEVKYEPFSF 406
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 VIEQYFGGTLDVELVCSEADEPP-THSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKM 179
+I+Q+FG + + C+E++E T +E+ LQLSCFI+Q+VKYL +GL+ ++ E ITK
Sbjct: 242 LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQ 301
Query: 180 SQTLGRDAVYTKTSKISRLPAYLTV 254
S TL R+A+Y K+SKISRLPAYLT+
Sbjct: 302 SPTLQRNALYIKSSKISRLPAYLTI 326
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLKLSGGSDWHCAYLLLYGP 725
VLTH+GRSSSSGHYV+WV R W++ L+LSGG DWH AY+LLYGP
Sbjct: 423 VLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGP 482
Query: 726 K 728
+
Sbjct: 483 R 483
>BT007183-1|AAP35847.1| 494|Homo sapiens ubiquitin specific
protease 14 (tRNA-guanine transglycosylase) protein.
Length = 494
Score = 101 bits (241), Expect = 4e-21
Identities = 48/89 (53%), Positives = 63/89 (70%)
Frame = +2
Query: 236 PCLFDSEFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDA 415
P + VRF+YKEKES+NAK+LKDVKFPL LD+YELCTPELQE++ R+KFK+LED
Sbjct: 321 PAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDK 380
Query: 416 KVQSSLSSGNKSHGDSSKAKKKRVLPYWF 502
KV ++ +K SS K+ + P+ F
Sbjct: 381 KVNQQPNTSDKK---SSPQKEVKYEPFSF 406
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 VIEQYFGGTLDVELVCSEADEPP-THSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKM 179
+I+Q+FG + + C+E++E T +E+ LQLSCFI+Q+VKYL +GL+ ++ E ITK
Sbjct: 242 LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQ 301
Query: 180 SQTLGRDAVYTKTSKISRLPAYLTV 254
S TL R+A+Y K+SKISRLPAYLT+
Sbjct: 302 SPTLQRNALYIKSSKISRLPAYLTI 326
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLKLSGGSDWHCAYLLLYGP 725
VLTH+GRSSSSGHYV+WV R W++ L+LSGG DWH AY+LLYGP
Sbjct: 423 VLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGP 482
Query: 726 K 728
+
Sbjct: 483 R 483
>BC003556-1|AAH03556.1| 494|Homo sapiens ubiquitin specific
peptidase 14 (tRNA-guanine transglycosylase) protein.
Length = 494
Score = 101 bits (241), Expect = 4e-21
Identities = 48/89 (53%), Positives = 63/89 (70%)
Frame = +2
Query: 236 PCLFDSEFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDA 415
P + VRF+YKEKES+NAK+LKDVKFPL LD+YELCTPELQE++ R+KFK+LED
Sbjct: 321 PAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDK 380
Query: 416 KVQSSLSSGNKSHGDSSKAKKKRVLPYWF 502
KV ++ +K SS K+ + P+ F
Sbjct: 381 KVNQQPNTSDKK---SSPQKEVKYEPFSF 406
Score = 94.7 bits (225), Expect = 3e-19
Identities = 45/85 (52%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 VIEQYFGGTLDVELVCSEADEPP-THSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKM 179
+I+Q+FG + + C+E++E T +E+ LQLSCFI+Q+VKYL +GL+ ++ E ITK
Sbjct: 242 LIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQ 301
Query: 180 SQTLGRDAVYTKTSKISRLPAYLTV 254
S TL R+A+Y K+SKISRLPAYLT+
Sbjct: 302 SPTLQRNALYIKSSKISRLPAYLTI 326
Score = 72.9 bits (171), Expect = 1e-12
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLKLSGGSDWHCAYLLLYGP 725
VLTH+GRSSSSGHYV+WV R W++ L+LSGG DWH AY+LLYGP
Sbjct: 423 VLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGP 482
Query: 726 K 728
+
Sbjct: 483 R 483
>BC142611-1|AAI42612.1| 593|Homo sapiens NES protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 4.3
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +2
Query: 278 EKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHG 457
E+E +N K ++D + PL+ + + E+QE L + N+ E + + Q S +
Sbjct: 525 EEEDLNRKEIQDSQVPLEKETLKSLGEEIQESLKTLENQSHETLERENQECPRSLEEDLE 584
Query: 458 DSSKAKKKR 484
KKK+
Sbjct: 585 TLKSLKKKK 593
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,703,784
Number of Sequences: 237096
Number of extensions: 1988009
Number of successful extensions: 5773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5764
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -