Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00979
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 111 7e-25
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 111 7e-25
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 111 7e-25
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 31 0.64
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 31 0.64
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 31 0.64
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylat... 30 1.5
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 30 1.5
U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like p... 30 2.0
AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like ... 30 2.0
AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like ... 30 2.0
U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical pr... 29 4.5
U23174-4|AAC46710.2| 294|Caenorhabditis elegans Serpentine rece... 28 7.9
U23174-3|AAX22284.1| 381|Caenorhabditis elegans Serpentine rece... 28 7.9
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 111 bits (266), Expect = 7e-25
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 6/249 (2%)
Frame = +3
Query: 6 IEQYFGGTLDVELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQ 185
IE F + + C E+DE E QL+C+++QDV++LQ+G+++ E +T+ S+
Sbjct: 214 IESLFRIQTETTMKCLESDEVSEKKVERNNQLTCYVNQDVRFLQTGIKAGFEEEMTRNSE 273
Query: 186 TLGRDAVYTKTSKISRLPAYLTVN---SFVSTTRRKNLSTLRY*KMLNSLWTWTCMNSAH 356
L RDA + K ++ISRLP YLTVN F + + N L+ + L T+ +
Sbjct: 274 ELNRDAKWQKNTQISRLPKYLTVNINRFFYKESTKTNAKILKSVQFPMQLDTYDLCSQEL 333
Query: 357 RNYKRG*HRCGINSRSWKMRKYNHRLAPVTRVTGTAARPRRSVSCPTG-SKTXXXXXXXL 533
++ K R I + R + + G V+ PT
Sbjct: 334 KD-KLVARRADIKLEEDAKLERELRKKVLDKEQGDKIFD-DGVALPTAFEDDAGSNNSGF 391
Query: 534 LPAAGVLTHRGRSSSSGHYVAWV--ARGAGWLRCXXXXXXXXXXXXXLKLSGGSDWHCAY 707
G++TH+GRSS GHYVAW+ + W LK SGG DWH AY
Sbjct: 392 YDLKGIITHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTSGGGDWHSAY 451
Query: 708 LLLYGPKIL 734
+LLY +++
Sbjct: 452 VLLYEARVI 460
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +2
Query: 263 RFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSG 442
RF+YKE NAKILK V+FP+ LD Y+LC+ EL+++L R K EDAK++ L
Sbjct: 300 RFFYKESTKTNAKILKSVQFPMQLDTYDLCSQELKDKLVARRADIKLEEDAKLERELRKK 359
Query: 443 --NKSHGD 460
+K GD
Sbjct: 360 VLDKEQGD 367
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 111 bits (266), Expect = 7e-25
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 6/249 (2%)
Frame = +3
Query: 6 IEQYFGGTLDVELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQ 185
IE F + + C E+DE E QL+C+++QDV++LQ+G+++ E +T+ S+
Sbjct: 214 IESLFRIQTETTMKCLESDEVSEKKVERNNQLTCYVNQDVRFLQTGIKAGFEEEMTRNSE 273
Query: 186 TLGRDAVYTKTSKISRLPAYLTVN---SFVSTTRRKNLSTLRY*KMLNSLWTWTCMNSAH 356
L RDA + K ++ISRLP YLTVN F + + N L+ + L T+ +
Sbjct: 274 ELNRDAKWQKNTQISRLPKYLTVNINRFFYKESTKTNAKILKSVQFPMQLDTYDLCSQEL 333
Query: 357 RNYKRG*HRCGINSRSWKMRKYNHRLAPVTRVTGTAARPRRSVSCPTG-SKTXXXXXXXL 533
++ K R I + R + + G V+ PT
Sbjct: 334 KD-KLVARRADIKLEEDAKLERELRKKVLDKEQGDKIFD-DGVALPTAFEDDAGSNNSGF 391
Query: 534 LPAAGVLTHRGRSSSSGHYVAWV--ARGAGWLRCXXXXXXXXXXXXXLKLSGGSDWHCAY 707
G++TH+GRSS GHYVAW+ + W LK SGG DWH AY
Sbjct: 392 YDLKGIITHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTSGGGDWHSAY 451
Query: 708 LLLYGPKIL 734
+LLY +++
Sbjct: 452 VLLYEARVI 460
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +2
Query: 263 RFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSG 442
RF+YKE NAKILK V+FP+ LD Y+LC+ EL+++L R K EDAK++ L
Sbjct: 300 RFFYKESTKTNAKILKSVQFPMQLDTYDLCSQELKDKLVARRADIKLEEDAKLERELRKK 359
Query: 443 --NKSHGD 460
+K GD
Sbjct: 360 VLDKEQGD 367
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 111 bits (266), Expect = 7e-25
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 6/249 (2%)
Frame = +3
Query: 6 IEQYFGGTLDVELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQ 185
IE F + + C E+DE E QL+C+++QDV++LQ+G+++ E +T+ S+
Sbjct: 214 IESLFRIQTETTMKCLESDEVSEKKVERNNQLTCYVNQDVRFLQTGIKAGFEEEMTRNSE 273
Query: 186 TLGRDAVYTKTSKISRLPAYLTVN---SFVSTTRRKNLSTLRY*KMLNSLWTWTCMNSAH 356
L RDA + K ++ISRLP YLTVN F + + N L+ + L T+ +
Sbjct: 274 ELNRDAKWQKNTQISRLPKYLTVNINRFFYKESTKTNAKILKSVQFPMQLDTYDLCSQEL 333
Query: 357 RNYKRG*HRCGINSRSWKMRKYNHRLAPVTRVTGTAARPRRSVSCPTG-SKTXXXXXXXL 533
++ K R I + R + + G V+ PT
Sbjct: 334 KD-KLVARRADIKLEEDAKLERELRKKVLDKEQGDKIFD-DGVALPTAFEDDAGSNNSGF 391
Query: 534 LPAAGVLTHRGRSSSSGHYVAWV--ARGAGWLRCXXXXXXXXXXXXXLKLSGGSDWHCAY 707
G++TH+GRSS GHYVAW+ + W LK SGG DWH AY
Sbjct: 392 YDLKGIMTHKGRSSQDGHYVAWMRSSEDGKWRLFDDEHVTVVDEEAILKTSGGGDWHSAY 451
Query: 708 LLLYGPKIL 734
+LLY +++
Sbjct: 452 VLLYEARVI 460
Score = 66.1 bits (154), Expect = 2e-11
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +2
Query: 263 RFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSG 442
RF+YKE NAKILK V+FP+ LD Y+LC+ EL+++L R K EDAK++ L
Sbjct: 300 RFFYKESTKTNAKILKSVQFPMQLDTYDLCSQELKDKLVARRADIKLEEDAKLERELRKK 359
Query: 443 --NKSHGD 460
+K GD
Sbjct: 360 VLDKEQGD 367
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 305 LKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKK 481
LK+ L++D E ELQ+ + +RN+++E DA + S K SS+ K++
Sbjct: 373 LKNQTLQLEIDASEKRYQELQKETSALRNRYQENLDATILMQTPSA-KERRSSSRPKRR 430
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 305 LKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKK 481
LK+ L++D E ELQ+ + +RN+++E DA + S K SS+ K++
Sbjct: 373 LKNQTLQLEIDASEKRYQELQKETSALRNRYQENLDATILMQTPSA-KERRSSSRPKRR 430
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 305 LKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKK 481
LK+ L++D E ELQ+ + +RN+++E DA + S K SS+ K++
Sbjct: 373 LKNQTLQLEIDASEKRYQELQKETSALRNRYQENLDATILMQTPSA-KERRSSSRPKRR 430
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAW---VARGAGWLRC 629
V+ H G S + GHYVA+ + + + WLRC
Sbjct: 764 VVCHLGDSPNKGHYVAYTKELYKNSSWLRC 793
>AF067616-2|AAC19188.2| 551|Caenorhabditis elegans Deubiquitylating
with usp/ubp andotu domains protein 2 protein.
Length = 551
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGA---GWLRC 629
V+ H G S + GH+VA+ + GWLRC
Sbjct: 493 VVCHLGSSPNKGHHVAYTKKSLDNDGWLRC 522
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAW---VARGAGWLRC 629
V+ H G S + GHYVA+ + + + WLRC
Sbjct: 764 VVCHLGDSPNKGHYVAYTKELYKNSSWLRC 793
>U61947-10|AAB03132.1| 932|Caenorhabditis elegans Kinesin-like
protein protein 18 protein.
Length = 932
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 305 LKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKK 481
LK+ L+++ E ELQ+ + +RN+++E DA + S K SS+ K++
Sbjct: 443 LKNQTLQLEIEASEKRYQELQKETSALRNRYQENLDATILMQTPSA-KERRSSSRPKRR 500
>AY211948-1|AAO34669.1| 932|Caenorhabditis elegans kinesin-like
protein-18 protein.
Length = 932
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 305 LKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKK 481
LK+ L+++ E ELQ+ + +RN+++E DA + S K SS+ K++
Sbjct: 443 LKNQTLQLEIEASEKRYQELQKETSALRNRYQENLDATILMQTPSA-KERRSSSRPKRR 500
>AB033538-1|BAB19356.2| 930|Caenorhabditis elegans kinesin like
protein KLP-18 protein.
Length = 930
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 305 LKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSLSSGNKSHGDSSKAKKK 481
LK+ L+++ E ELQ+ + +RN+++E DA + S K SS+ K++
Sbjct: 441 LKNQTLQLEIEASEKRYQELQKETSALRNRYQENLDATILMQTPSA-KERRSSSRPKRR 498
>U88180-7|AAB42297.2| 789|Caenorhabditis elegans Hypothetical
protein T27A3.2 protein.
Length = 789
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGAGWL 623
G+++H G SGHYVA + + W+
Sbjct: 737 GMISHMGSRPDSGHYVAHMLKEGKWV 762
>U23174-4|AAC46710.2| 294|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 14, isoform b
protein.
Length = 294
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 201 AVYTKTSKISRLPAYLTVNSFVSTTRRKNLSTLRY*KMLNSLWTWTCMNSAHRNYKR 371
++ T ++ + T NSF+ T R ++ + + +SL+ + +NS+ RN R
Sbjct: 20 SIQNYTEDDCQIAFHATTNSFMQTIRLVHIFFCTFGAISSSLFIYVLLNSSSRNLHR 76
>U23174-3|AAX22284.1| 381|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 14, isoform a
protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +3
Query: 201 AVYTKTSKISRLPAYLTVNSFVSTTRRKNLSTLRY*KMLNSLWTWTCMNSAHRNYKR 371
++ T ++ + T NSF+ T R ++ + + +SL+ + +NS+ RN R
Sbjct: 20 SIQNYTEDDCQIAFHATTNSFMQTIRLVHIFFCTFGAISSSLFIYVLLNSSSRNLHR 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,977,848
Number of Sequences: 27780
Number of extensions: 294556
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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