Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00979
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.0  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   3.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   3.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.0  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 238 GRRLILLVFVYTASLPSVCDIFVICSAIFDL 146
           G   ++ +F  + SL +  ++F++  AIFD+
Sbjct: 74  GNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 112 YHKTSNICSLD*DRKWLSI*QRCHKHWAGMLCTQKLVK 225
           +HK +  C  D  RK+L +   C    +  LC  K ++
Sbjct: 110 FHKIALTCEDDVHRKFLHVNDECDVALSFKLCMLKAMR 147


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 240 QGDGLFY*FLCTQHPCPVFVTSLLYAQPFSI 148
           +G  LF  FL    PC V  TSL   +P+++
Sbjct: 180 KGFSLFARFLKNPRPCNVLATSL--TEPYTL 208


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 238 GRRLILLVFVYTASLPSVCDIFVICSAIFDL 146
           G   ++ +F  + SL +  ++F++  AIFD+
Sbjct: 74  GNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI 104


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 398 KELEDAKVQSSLSSGNKSHGDSSKAKKKRV 487
           KELE   +Q+       +HG SSK +K  V
Sbjct: 82  KELEVLMMQNRKFCAEIAHGGSSKKRKSIV 111


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 138 SGLRSKMAEHITKMSQTLGRDAVYT 212
           S L+  +A H + +S  LGR A ++
Sbjct: 277 SSLQPSLASHHSHLSSALGRSACHS 301


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 293 NAKILKDVKFPLDLDV 340
           N+K+LK VK P D+ +
Sbjct: 161 NSKLLKQVKIPHDIAI 176


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 518  LPTCFRTSRARHASSWPCCCPRD 450
            +P CF + R R    + C  P D
Sbjct: 1054 MPACFDSDRERLYDCYVCYSPND 1076


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 538 GSSRCCCCLRVFEPVGQDTLL 476
           G S+C  C R FE  G  + L
Sbjct: 270 GDSKCSLCQRRFEEQGNYSCL 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,412
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)