Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00979
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative... 67 1e-11
At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative... 64 9e-11
At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putativ... 33 0.15
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR... 32 0.45
At2g34357.1 68415.m04206 expressed protein 32 0.45
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR... 31 0.60
At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25) ... 30 1.4
At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putativ... 29 3.2
At2g32905.1 68415.m04034 hypothetical protein contains Pfam prof... 29 3.2
At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly... 29 4.2
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ... 28 7.4
At3g60860.1 68416.m06808 guanine nucleotide exchange family prot... 28 7.4
At3g52890.2 68416.m05829 protein kinase (KIPK) identical to prot... 28 7.4
At3g52890.1 68416.m05828 protein kinase (KIPK) identical to prot... 28 7.4
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 27 9.8
>At3g21280.1 68416.m02689 ubiquitin-specific protease 7, putative
(UBP7) similar to GI:11993467
Length = 532
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/72 (38%), Positives = 49/72 (68%)
Frame = +2
Query: 254 EFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAKVQSSL 433
+FVRF++K + + AKIL+ V +PL+LD+Y+LC+ +L+++L R K +++E K+
Sbjct: 361 QFVRFFWKRESNQKAKILRKVDYPLELDIYDLCSEDLRKKLEAPRQKLRDIEGQKLGLQA 420
Query: 434 SSGNKSHGDSSK 469
S+ + S GD K
Sbjct: 421 SAKSSSKGDDVK 432
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLKLSGGSDWHCAYLLLYGP 725
VLTH+GRS+ SGHYVAWV + +G W++ +KLSGG DWH AY+++Y
Sbjct: 468 VLTHKGRSADSGHYVAWVKQESGKWVQYDDANTSLQRGEDIIKLSGGGDWHMAYIVMYKA 527
Query: 726 KIL 734
+++
Sbjct: 528 RLI 530
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/83 (40%), Positives = 45/83 (54%)
Frame = +3
Query: 6 IEQYFGGTLDVELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQ 185
++ FG L L C E+ E + +E F L C IS +V +L GL+ + + K S
Sbjct: 279 VKALFGLNLLNRLHCQESSEESSETESVF-SLKCHISHEVNHLHEGLKHGLKGELEKTSP 337
Query: 186 TLGRDAVYTKTSKISRLPAYLTV 254
+LGR AVY K S I LP YLTV
Sbjct: 338 SLGRTAVYVKESLIDSLPRYLTV 360
>At1g51710.1 68414.m05827 ubiquitin-specific protease 6, putative
(UBP6) similar to GI:11993465
Length = 482
Score = 64.1 bits (149), Expect = 9e-11
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGAG-WLRCXXXXXXXXXXXXXLKLSGGSDWHCAYLLLY 719
VLTH+GRS+ SGHYVAWV + +G W++ KLSGG DWH AY+ +Y
Sbjct: 418 VLTHKGRSADSGHYVAWVKQESGKWIQYDDDNPSMQREEDITKLSGGGDWHMAYITMY 475
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/83 (39%), Positives = 44/83 (53%)
Frame = +3
Query: 6 IEQYFGGTLDVELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQ 185
++ FG L L C E+ E + +E S L C IS +V +L GL+ + + K S
Sbjct: 225 VKALFGVNLQSRLHCQESGEESSETE-SVYSLKCHISHEVNHLHEGLKHGLKGELEKTSP 283
Query: 186 TLGRDAVYTKTSKISRLPAYLTV 254
LGR A+Y K S I LP YLTV
Sbjct: 284 ALGRTALYVKESLIDSLPRYLTV 306
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/67 (41%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Frame = +2
Query: 254 EFVRFYYKEKESINAKILKDVKFPLDLDVYELCTPELQERLTPMRNKFKELEDAK--VQS 427
+FVRF++K + + AKIL+ V +PL LD+++LC+ +L+++L R K +E E K +Q+
Sbjct: 307 QFVRFFWKRESNQKAKILRKVDYPLVLDIFDLCSEDLRKKLEAPRQKLREEEGKKLGLQT 366
Query: 428 SLSSGNK 448
S SG+K
Sbjct: 367 SAKSGSK 373
>At5g57990.1 68418.m07255 ubiquitin-specific protease 23, putative
(UBP23) identical to GI:11993486
Length = 859
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGAG 617
GVL H GRSS SGHY +V +G
Sbjct: 356 GVLVHYGRSSHSGHYACFVRTSSG 379
>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1165
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 39 ELVCSEADEPPTHSEESFLQLSCFISQDVKYLQSGLRS 152
E+V DE +++FL ++CF SQDV Y++S L S
Sbjct: 448 EVVQVSYDELSLAQKDAFLDIACFRSQDVDYVESLLVS 485
>At2g34357.1 68415.m04206 expressed protein
Length = 1280
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 386 RNKFKELEDAKVQSSLSSGNKSHGDSSKAKKKRV 487
R+K KEL DA + S G++ G+SSK +KR+
Sbjct: 1149 RSKRKELSDADSDAKSSKGSRFSGNSSKKNQKRM 1182
>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
class), putative (RPS4) domain signature TIR-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS4 (GI:11357255). False intron created at
intron 2 to escape a frameshift in the BAC sequence.
Length = 1217
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 60 DEPPTHSEESFLQLSCFISQDVKYLQSGLRS 152
DE T +++FL ++CF SQD Y++S L S
Sbjct: 447 DELTTAQKDAFLDIACFRSQDKDYVESLLAS 477
>At3g14400.1 68416.m01822 ubiquitin-specific protease 25 (UBP25)
similar to GI:11993490
Length = 661
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGAG-WLRC 629
G++ H G S SGHY A+V G W C
Sbjct: 281 GIIVHSGFSPESGHYYAYVKDSLGRWYCC 309
>At3g20630.1 68416.m02610 ubiquitin-specific protease 14, putative
(UBP14) similar to ubiquitin-specific protease 14
GI:11993473 [Arabidopsis thaliana]
Length = 797
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 546 GVLTHRGRSSSSGHYVAWVARGAGWL 623
G+++H G S GHYVA + + W+
Sbjct: 745 GIVSHMGTSVHCGHYVAHILKEGRWV 770
>At2g32905.1 68415.m04034 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 205
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 7 SSNTSEVPWMWSLYAQR---LMSPRPTLRSHSSSCPVSYHKTSNICSLD*DRKWLSI 168
SSN + PW + QR L +P P SSSC + K ++ + RK L I
Sbjct: 71 SSNKTITPWTRVIEQQRSSELQNPNPESEPSSSSCVTHFKKRRHMDKEESTRKRLKI 127
>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
endopeptidase, putative / post-proline cleaving enzyme,
putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
3.4.21.26) (Post-proline cleaving enzyme) {Mus
musculus}; contains Pfam profiles PF00326: prolyl
oligopeptidase family, PF02897: Prolyl oligopeptidase,
N-terminal beta-propeller domain
Length = 731
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 63 EPPTHSEESFLQLSCF-ISQDVKYLQSGLRSKMAEHIT 173
+P T S++ + L+ F +S+D KYL GL S ++ +T
Sbjct: 122 DPNTLSDDGTVALNTFSVSEDAKYLAYGLSSSGSDWVT 159
>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
almost identical to ubiquitin-specific protease 22
GI:11993484 [Arabidopsis thaliana], one amino acid
difference
Length = 557
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 549 VLTHRGRSSSSGHYVAWVARGAGWLRC 629
V+TH+G S GHYV ++ W RC
Sbjct: 480 VVTHKGMLES-GHYVTYLRLKGLWYRC 505
>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor, Homo
sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1793
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Frame = +2
Query: 293 NAKILKDVKFPLDLDVYELCTPELQER--LTPMRNKFKELEDAKVQSSLSSGNKSHGDSS 466
N + KD+ + C +L E +P NK+K QSSL SG ++
Sbjct: 1278 NNRFSKDISLS-SIAFLRYCATKLAEGDLNSPSTNKYKGTSGKIPQSSLHSGKSGKQENG 1336
Query: 467 KAKKKRVLPYWF 502
+ L +WF
Sbjct: 1337 EIVNNNHLYFWF 1348
>At3g52890.2 68416.m05829 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +3
Query: 84 ESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQTLGRDAVYTKTSKISRLPAYLTVNSF 263
E Q+SCF + Q G + K +H++K Q L R ++ P NSF
Sbjct: 725 EPSCQVSCFSPRLSSNQQQGRKPKRGDHLSKTQQHLSR-----SLPQLVAEPTEARSNSF 779
Query: 264 VST 272
V T
Sbjct: 780 VGT 782
>At3g52890.1 68416.m05828 protein kinase (KIPK) identical to protein
kinase KIPK (KCBP-interacting protein kinase)
[Arabidopsis thaliana] gi|7716430|gb|AAF68383
Length = 934
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +3
Query: 84 ESFLQLSCFISQDVKYLQSGLRSKMAEHITKMSQTLGRDAVYTKTSKISRLPAYLTVNSF 263
E Q+SCF + Q G + K +H++K Q L R ++ P NSF
Sbjct: 725 EPSCQVSCFSPRLSSNQQQGRKPKRGDHLSKTQQHLSR-----SLPQLVAEPTEARSNSF 779
Query: 264 VST 272
V T
Sbjct: 780 VGT 782
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 395 FKELEDA---KVQSSLSSGNKSHGDSSKAKKKRV 487
F+++ D+ ++SS SGNK HG S KK+ V
Sbjct: 34 FRQISDSVTEHMESSSPSGNKDHGKSFIPKKEEV 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,479
Number of Sequences: 28952
Number of extensions: 279053
Number of successful extensions: 797
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -