Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00978
(416 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67; Eukaryo... 130 1e-29
UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107; Fungi/... 120 2e-26
UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57; Eukaryo... 118 5e-26
UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-gr... 103 1e-21
UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|R... 99 2e-20
UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4... 92 4e-18
UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;... 89 3e-17
UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, wh... 83 2e-15
UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative; ... 79 3e-14
UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas ... 79 4e-14
UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;... 73 3e-12
UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1; Encephal... 62 3e-09
UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1; ... 56 3e-07
UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951, ... 53 3e-06
UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1; Methan... 46 4e-04
UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31; Archa... 46 4e-04
UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillard... 45 7e-04
UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8; Euryar... 39 0.036
UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus... 39 0.048
UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12; Archa... 37 0.15
UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2; Methan... 35 0.59
UniRef50_Q97X74 Cluster: ATP-dependent helicase, putative; n=14;... 35 0.78
UniRef50_Q9HIS6 Cluster: 50S ribosomal protein L18P; n=3; Thermo... 33 1.8
UniRef50_A6QSE2 Cluster: Predicted protein; n=1; Ajellomyces cap... 33 3.1
UniRef50_Q16JW5 Cluster: Putative uncharacterized protein; n=1; ... 31 9.6
UniRef50_Q5JHA7 Cluster: Predicted ATP-dependent endonuclease, O... 31 9.6
UniRef50_A0RUE8 Cluster: Ribosomal protein L18; n=1; Cenarchaeum... 31 9.6
>UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67;
Eukaryota|Rep: 60S ribosomal protein L5 - Drosophila
melanogaster (Fruit fly)
Length = 299
Score = 130 bits (313), Expect = 1e-29
Identities = 59/84 (70%), Positives = 67/84 (79%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYRLIVRLSNKD+T Q+AY+RIEGD +VCAAYSHELP+YG++VGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRLIVRLSNKDITVQIAYARIEGDRVVCAAYSHELPKYGIQVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTGTT 2
TG LD+LY G T
Sbjct: 100 CTGLLVARRVLNKLGLDSLYAGCT 123
Score = 78.2 bits (184), Expect = 6e-14
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNKQYFKRYQVKF++RREGKTDYYARKRL + +
Sbjct: 1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDK 41
>UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107;
Fungi/Metazoa group|Rep: 60S ribosomal protein L5 - Homo
sapiens (Human)
Length = 297
Score = 120 bits (288), Expect = 2e-26
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 100 CTGLLLARRLLNRFGMDKIYEG 121
Score = 79.0 bits (186), Expect = 4e-14
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57;
Eukaryota|Rep: 60S ribosomal protein L5 - Caenorhabditis
elegans
Length = 293
Score = 118 bits (284), Expect = 5e-26
Identities = 55/82 (67%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYRLIVR++NKDV Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
+TG LD+ Y G
Sbjct: 100 ATGLLLARRHLKTIGLDSTYKG 121
Score = 72.5 bits (170), Expect = 3e-12
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MG VKV+KNK YFKRYQVK ++RREGKTDYYARKRL V+ +
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDK 41
>UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-green
alga; n=1; Ostreococcus tauri|Rep: T08009 probable
ribosomal protein L5-green alga - Ostreococcus tauri
Length = 331
Score = 103 bits (247), Expect = 1e-21
Identities = 42/63 (66%), Positives = 52/63 (82%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYN+PKYR +VR +N+DV QV Y+ + GD +CAAYSHELP+YG+K GLTNYAA Y
Sbjct: 49 DKNKYNSPKYRFVVRFTNRDVVCQVVYATLSGDVTICAAYSHELPKYGMKAGLTNYAATY 108
Query: 73 STG 65
+TG
Sbjct: 109 ATG 111
Score = 40.3 bits (90), Expect = 0.016
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = -3
Query: 354 VVKNKQYFKRYQVKFKKRREG--KTDYYARKRLVVRTR 247
V K Y RYQVKF +RR G KTDY AR+RL+ + +
Sbjct: 13 VAKTTAYQSRYQVKFARRRLGACKTDYQARQRLITQDK 50
>UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|Rep:
Ribosomal protein L5e - Hister sp. APV-2005
Length = 268
Score = 99 bits (238), Expect = 2e-20
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVK 104
DKNKYNTPKYRLIVR SN+D+T Q+AYSRIEGD I+CAAYSHELPRYGVK
Sbjct: 40 DKNKYNTPKYRLIVRFSNRDITCQIAYSRIEGDKILCAAYSHELPRYGVK 89
Score = 81.0 bits (191), Expect = 9e-15
Identities = 35/41 (85%), Positives = 40/41 (97%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNKQYFKR+QVKFK+RREGKTDYYARKRL+V+ +
Sbjct: 1 MGFVKVVKNKQYFKRFQVKFKRRREGKTDYYARKRLIVQDK 41
>UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4;
Leishmania|Rep: 60S ribosomal protein L5, putative -
Leishmania major strain Friedlin
Length = 328
Score = 92.3 bits (219), Expect = 4e-18
Identities = 37/63 (58%), Positives = 52/63 (82%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DK K+ +PKYRL+VR++NKD+ Q+ ++I GD +V AAY+HELP +G++ GLTNYAAAY
Sbjct: 63 DKTKFGSPKYRLVVRITNKDIIAQIVQAKIVGDEVVMAAYAHELPAFGIEHGLTNYAAAY 122
Query: 73 STG 65
+TG
Sbjct: 123 ATG 125
Score = 68.5 bits (160), Expect = 5e-11
Identities = 28/42 (66%), Positives = 39/42 (92%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTRT 244
M FVKVVKNK YFKR+QVK+++RREGKTDY+AR+++V++ +T
Sbjct: 24 MPFVKVVKNKAYFKRFQVKYRRRREGKTDYHARRQMVLQDKT 65
>UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L18p/L5e
family protein - Tetrahymena thermophila SB210
Length = 590
Score = 89.0 bits (211), Expect = 3e-17
Identities = 40/84 (47%), Positives = 55/84 (65%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DK+KYNTPKYRL+ R +N + Q+ Y+ ++ D ++CAA S+EL R+GV GL +YAAAY
Sbjct: 329 DKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAY 388
Query: 73 STGXXXXXXXXXXXXLDTLYTGTT 2
+TG LDT+Y G T
Sbjct: 389 ATGLLLARRLLKQIGLDTVYAGQT 412
Score = 44.0 bits (99), Expect = 0.001
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYY 277
+GFVKV+K K YFKR+Q K+++RR GK YY
Sbjct: 13 LGFVKVLKTKAYFKRFQTKYRRRR-GKQLYY 42
Score = 32.3 bits (70), Expect = 4.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 318 VKFKKRREGKTDYYARKRLVVRTR 247
++ K+ +G TDYYARKRL+++ +
Sbjct: 307 IQIKQNYQGLTDYYARKRLIIQDK 330
>UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_13,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 338
Score = 83.4 bits (197), Expect = 2e-15
Identities = 39/82 (47%), Positives = 52/82 (63%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DK+KYN+PKYR +VR +N + QV Y+ ++GD +V AA S EL R+G+ GLTNYAAAY
Sbjct: 40 DKDKYNSPKYRFVVRHTNTKIICQVIYATLKGDKVVAAAESTELKRFGLTSGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
+TG +D Y G
Sbjct: 100 ATGLLLARRTLKTLKMDKFYEG 121
Score = 65.3 bits (152), Expect = 5e-10
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
M FVK+VK YFKR+Q KF++RREGKTDYYAR RL+V+ +
Sbjct: 1 MAFVKLVKGTPYFKRFQTKFRRRREGKTDYYARSRLIVQDK 41
>UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative;
n=4; Plasmodium (Vinckeia)|Rep: Ribosomal protein family
L5, putative - Plasmodium berghei
Length = 314
Score = 79.4 bits (187), Expect = 3e-14
Identities = 38/63 (60%), Positives = 44/63 (69%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYN K R IVR +N + Q+A S IEGD I+ A S EL RYG+ VGL NYAAAY
Sbjct: 40 DKNKYNAQKLRFIVRKTNNQIICQIASSHIEGDKILSEAKSKELIRYGIPVGLKNYAAAY 99
Query: 73 STG 65
+TG
Sbjct: 100 ATG 102
Score = 66.9 bits (156), Expect = 2e-10
Identities = 28/41 (68%), Positives = 36/41 (87%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
M +VKVVKNK YFKRYQVK+++RREGKTDY ARK L+++ +
Sbjct: 1 MAYVKVVKNKAYFKRYQVKYRRRREGKTDYRARKALILQDK 41
>UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas
vaginalis|Rep: Ribosomal protein L5 - Trichomonas
vaginalis
Length = 308
Score = 79.0 bits (186), Expect = 4e-14
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DK KY KYRL+ R++N V Q+ + + GD VC A S ELP+YG+K+GL+NY AAY
Sbjct: 39 DKTKYGAAKYRLVARITNTKVIAQIVVAELTGDKTVCQALSTELPKYGIKLGLSNYPAAY 98
Query: 73 STG 65
+TG
Sbjct: 99 ATG 101
Score = 49.2 bits (112), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = -3
Query: 357 KVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTRT 244
K+VKN YF R+Q KF++RRE KTDY R +L+ + +T
Sbjct: 4 KLVKNAGYFSRFQTKFRRRREAKTDYVQRTQLIQQDKT 41
>UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 161
Score = 72.5 bits (170), Expect = 3e-12
Identities = 35/71 (49%), Positives = 45/71 (63%)
Frame = -2
Query: 220 LIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXX 41
+IV +N+ + Q+AY+ E D IVCAAY+HELP+ GVKVGLTNYAAAY G
Sbjct: 1 MIVLATNRGIICQIAYAGNECDMIVCAAYAHELPKSGVKVGLTNYAAAYCIGLLLAHRLL 60
Query: 40 XXXXLDTLYTG 8
+D +Y G
Sbjct: 61 NRFGMDKIYEG 71
>UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L5 -
Encephalitozoon cuniculi
Length = 283
Score = 62.5 bits (145), Expect = 3e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
D N + K+RL+VR++ V Q+ + ++GD ++ A S EL RYG+ G TNY+AAY
Sbjct: 34 DSNSCGSVKHRLVVRITGSRVICQIVAAYMDGDRVMVYADSRELERYGINFGATNYSAAY 93
Query: 73 STG 65
+TG
Sbjct: 94 ATG 96
Score = 36.3 bits (80), Expect = 0.25
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 342 KQYFKRYQVKFKKRREGKTDYYARKRLV 259
+ Y K +QVK ++RREGKTDY R ++
Sbjct: 4 RNYHKNFQVKRRRRREGKTDYKHRTNMI 31
>UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1;
Theileria sp. CAAS-2005|Rep: Putative uncharacterized
protein - Theileria sp. CAAS-2005
Length = 255
Score = 56.0 bits (129), Expect = 3e-07
Identities = 31/67 (46%), Positives = 38/67 (56%)
Frame = -2
Query: 208 LSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXX 29
++NK V QV S + GD + +A S EL YGVKVGLTNYAAAY TG
Sbjct: 4 VTNKRVICQVVSSTLVGDKVHASADSAELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLK 63
Query: 28 LDTLYTG 8
LD+ + G
Sbjct: 64 LDSQFVG 70
>UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_2951, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 117
Score = 52.8 bits (121), Expect = 3e-06
Identities = 21/33 (63%), Positives = 26/33 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGD 155
DKNKYNTPKYR +VR +NKD+T Q+ + I GD
Sbjct: 51 DKNKYNTPKYRFVVRFTNKDITAQIISASIAGD 83
Score = 52.4 bits (120), Expect = 4e-06
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLV 259
+ FVK K + Y KR+QVKFK+RR GKTDY AR RL+
Sbjct: 12 LAFVKAQKTRAYSKRFQVKFKRRRAGKTDYRARIRLI 48
>UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1;
Methanoculleus marisnigri JR1|Rep: Ribosomal protein
L18P/L5E - Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1)
Length = 175
Score = 45.6 bits (103), Expect = 4e-04
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = -2
Query: 223 RLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 65
R++VR +N+ + Q+ +EGD + AAYS EL YG + + AAY TG
Sbjct: 34 RMVVRKTNRQIIVQLVVPEVEGDSTLVAAYSAELAGYGYEGSTASTPAAYLTG 86
Score = 34.3 bits (75), Expect = 1.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -3
Query: 327 RYQVKFKKRREGKTDYYARKRLV 259
RY V F++R EGKTDYY R L+
Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLL 28
>UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31;
Archaea|Rep: 50S ribosomal protein L18P - Aeropyrum
pernix
Length = 214
Score = 45.6 bits (103), Expect = 4e-04
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -2
Query: 229 KYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHEL-PRYGVKVGLTNYAAAYSTG 65
K R+ VR+SN+ + Q +RIEGD ++ AA+S EL ++G K N AAY TG
Sbjct: 32 KPRMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTG 87
Score = 36.3 bits (80), Expect = 0.25
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = -3
Query: 327 RYQVKFKKRREGKTDYYARKRLV 259
RY+V ++RREGKT+YY R RLV
Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLV 28
>UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillardia
theta|Rep: 60S ribosomal protein L5 - Guillardia theta
(Cryptomonas phi)
Length = 232
Score = 44.8 bits (101), Expect = 7e-04
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DK K+ K R+I+R S ++++ Q+ S ++GD I+ ++Y L + K NY +Y
Sbjct: 40 DKKKFENKKKRIIIRFSKRNLSLQMVNSNVDGDFILLSSYLKNLSKLEYKNLTNNYPFSY 99
Query: 73 STG 65
G
Sbjct: 100 LLG 102
Score = 33.5 bits (73), Expect = 1.8
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 345 NKQYFKRYQVKFKKRREGKTDYYARKRLV 259
N Y R+++K ++RR GKTDY R +L+
Sbjct: 9 NASYHSRFKLKKRRRRIGKTDYKKRMKLI 37
>UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L18P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 187
Score = 39.1 bits (87), Expect = 0.036
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = -2
Query: 229 KYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 65
K RL+ R SNK V Q+ GD + +A+S +L YG + N +AY TG
Sbjct: 32 KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTG 86
Score = 31.9 bits (69), Expect = 5.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -3
Query: 327 RYQVKFKKRREGKTDYYARKRLV 259
RY+V ++RRE +TDY+ R RL+
Sbjct: 6 RYKVPMRRRREARTDYHQRLRLL 28
>UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus
musculus|Rep: PREDICTED: cadherin 18 - Mus musculus
Length = 339
Score = 38.7 bits (86), Expect = 0.048
Identities = 28/87 (32%), Positives = 40/87 (45%)
Frame = -3
Query: 321 QVKFKKRREGKTDYYARKRLVVRTRTNITHLNIV*LCVSPTKM*HXRWPTLGLKVTILCA 142
+++F++ +EGKTDYYARKRL ++ + N S P K
Sbjct: 36 KLRFRRWQEGKTDYYARKRLEIQDK---NEYNTPEXDDSSCNXQRYHLPDCIXKKFXSSV 92
Query: 141 LLIHMSCHVMV*RLV*QIMLRHIQLVC 61
+HM MV +L IML+ I L C
Sbjct: 93 PCMHMKFQNMVXKLAXNIMLQPIALAC 119
>UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12;
Archaea|Rep: 50S ribosomal protein L18P - Methanosarcina
mazei (Methanosarcina frisia)
Length = 174
Score = 37.1 bits (82), Expect = 0.15
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -2
Query: 223 RLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 65
R++VR S ++V Q+ EGD +A S EL +YG N AAY TG
Sbjct: 34 RVVVRKSARNVQIQLLAPTPEGDITYSSAVSSELAKYGYTGATGNTTAAYLTG 86
Score = 33.9 bits (74), Expect = 1.4
Identities = 12/24 (50%), Positives = 21/24 (87%)
Frame = -3
Query: 327 RYQVKFKKRREGKTDYYARKRLVV 256
RY+V F++RREG+T+Y+ R +L++
Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLL 29
>UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2;
Methanobacteriaceae|Rep: 50S ribosomal protein L18P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 193
Score = 35.1 bits (77), Expect = 0.59
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = -3
Query: 324 YQVKFKKRREGKTDYYARKRLVVRTRTNI 238
Y+V+FK+RREGKT+Y R +LV +T +
Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKTRM 35
>UniRef50_Q97X74 Cluster: ATP-dependent helicase, putative; n=14;
Sulfolobus|Rep: ATP-dependent helicase, putative -
Sulfolobus solfataricus
Length = 665
Score = 34.7 bits (76), Expect = 0.78
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 187 MLHLCWRDAQSDDI*VCYICSCPNNEAFTSIIISFPFTT 303
M H WR+ DD+ V Y C + E I++S PFTT
Sbjct: 80 MYHRFWREVFDDDVGVEYEGDCESFEKGKKIVVSTPFTT 118
>UniRef50_Q9HIS6 Cluster: 50S ribosomal protein L18P; n=3;
Thermoplasma|Rep: 50S ribosomal protein L18P -
Thermoplasma acidophilum
Length = 163
Score = 33.5 bits (73), Expect = 1.8
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 223 RLIVRLSNKDVTXQVA-YSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 65
R IVR++ K V QVA YS I GD I+ L +YGV + N Y G
Sbjct: 29 RFIVRITGKGVIAQVAEYSDI-GDRILFTVTDKTLAKYGVDLRGNNIQVCYLVG 81
>UniRef50_A6QSE2 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 148
Score = 32.7 bits (71), Expect = 3.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 228 LGVLYLFLSEQRGVYEHNNQFSLHDAS*ILLGTS*SIVCSS 350
LG+LYLFL V+ HN F LH LG ++ S+
Sbjct: 12 LGILYLFLGAFYTVFTHNYDFELHQVGLSFLGLLLGMITSA 52
>UniRef50_Q16JW5 Cluster: Putative uncharacterized protein; n=1; Aedes
aegypti|Rep: Putative uncharacterized protein - Aedes
aegypti (Yellowfever mosquito)
Length = 1904
Score = 31.1 bits (67), Expect = 9.6
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 4 LCQCIRCQVPVFEAVFVLIADQLNMPQHNLSDQPSHHNVATHVNKQRTQYGH--LQSESR 177
LC ++ + + + + N SD +H + T +N+Q+T+ GH S SR
Sbjct: 984 LCTLLKSDADFTPKLIIPDREMRHFDPANTSDTNPYHGIITLLNQQKTKEGHNGTASGSR 1043
Query: 178 PPG 186
PG
Sbjct: 1044 GPG 1046
>UniRef50_Q5JHA7 Cluster: Predicted ATP-dependent endonuclease, OLD
family; n=1; Thermococcus kodakarensis KOD1|Rep:
Predicted ATP-dependent endonuclease, OLD family -
Pyrococcus kodakaraensis (Thermococcus kodakaraensis)
Length = 648
Score = 31.1 bits (67), Expect = 9.6
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 360 VKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTRTNIT 235
V +K+K+YFK+ +K+ KR E RK+ ++R ++
Sbjct: 537 VNKIKSKEYFKKQYLKYFKRMESNLREIERKQNMIRAINRVS 578
>UniRef50_A0RUE8 Cluster: Ribosomal protein L18; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L18 - Cenarchaeum
symbiosum
Length = 159
Score = 31.1 bits (67), Expect = 9.6
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -2
Query: 214 VRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXX 35
V +SN++ Q+ +++GD ++ + +S L G K + A+Y TG
Sbjct: 33 VHISNENAQVQIHAPKMDGDVVIASGHSRYLASKGWKGSRKSIPASYLTGYLAGKRAVKK 92
Query: 34 XXLDT-LYTGT 5
+YTGT
Sbjct: 93 GAKSAIMYTGT 103
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,374,299
Number of Sequences: 1657284
Number of extensions: 8186329
Number of successful extensions: 19578
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 19137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19565
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19465676618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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