Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00978
         (416 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    90   1e-19
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    90   1e-19
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    28   0.67 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.2  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    27   1.5  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    25   6.2  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   6.2  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    24   8.2  
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           24   8.2  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    24   8.2  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 38/62 (61%), Positives = 49/62 (79%)
 Frame = -2

Query: 250 KNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 71
           KNKYN PKYRL+VR SN+ VT Q+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+
Sbjct: 41  KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYA 100

Query: 70  TG 65
           TG
Sbjct: 101 TG 102



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 25/41 (60%), Positives = 33/41 (80%)
 Frame = -3

Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
           M F+K VK+  YF RYQ K+++RREGKTDYYARKRL+ + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAK 41


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 89.8 bits (213), Expect = 1e-19
 Identities = 38/62 (61%), Positives = 49/62 (79%)
 Frame = -2

Query: 250 KNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYS 71
           KNKYN PKYRL+VR SN+ VT Q+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+
Sbjct: 41  KNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYA 100

Query: 70  TG 65
           TG
Sbjct: 101 TG 102



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 25/41 (60%), Positives = 33/41 (80%)
 Frame = -3

Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
           M F+K VK+  YF RYQ K+++RREGKTDYYARKRL+ + +
Sbjct: 1   MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAK 41


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 27.9 bits (59), Expect = 0.67
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 238 YICSCPNNEAFTSIIISFPFTTLLEFYLVPLEVLF 342
           Y  SCP N  +  ++ S+   + +++YL  L+  F
Sbjct: 135 YFVSCPENAIYLVVLPSYEIESSIDYYLSSLQESF 169


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 79  PQHNLSDQPSHHNVATHVNKQRTQYGHLQSESR 177
           PQH LSDQP   N +      R +   + S+SR
Sbjct: 830 PQHKLSDQPRSRNNSISNVSHRERSNSVSSKSR 862


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
 Frame = +1

Query: 142 RTQYGHLQSESRPPGMLH---LCWRDAQSDDI*VCYICSCPNNEAFTSIIISFP--FTTL 306
           RT   + ++  +    +H   LCW  A   ++   +I    N + +  +       F+  
Sbjct: 392 RTNTSNARNREKAIWQIHEKLLCWERALPIELRQYFIALTENAQIYEELDFEKQRLFSAC 451

Query: 307 LEFYLVPLEVLFVLHNFNES 366
           +E YL     L  LH  NES
Sbjct: 452 IEVYLSYCNTLIFLHRLNES 471


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -2

Query: 202 NKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 80
           N+D      + +   D  VC +++  +  YG + G  +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 25  QVPVFEAVFVLIADQLNMPQHN 90
           QVP+    F+ +   LN+P HN
Sbjct: 249 QVPLIAIAFLCVYFTLNLPHHN 270


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 292 PFTTLLEFYLVPLEVLFVLHNFNESHILNLSYK 390
           PF +LLE  + P+ VL V  N     IL    K
Sbjct: 350 PFASLLEGVIPPINVLIVEDNIINQKILETFMK 382


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 16  IRCQVPVFEAVFVLIADQLNMPQHN------LSDQPSHHNVATHVNKQRTQYGHLQSESR 177
           I+ Q P+   V V I+DQL  P  N      +  +P+H     H +    QY  L  ++R
Sbjct: 11  IQIQNPINNNVSVTISDQLPKPSANNPNLLSVDTRPTHRKGHHHKHSLSHQY-FLPPKNR 69

Query: 178 PP 183
            P
Sbjct: 70  QP 71


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 40  EAVFVLIADQLNMPQHNLSDQPSHHNVATHV 132
           EAV + + D  +    +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 181 PGMLHLCWRDAQSDDI 228
           PG L L W  AQ DDI
Sbjct: 263 PGQLSLAWLLAQGDDI 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,592
Number of Sequences: 5004
Number of extensions: 36273
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)