Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00978
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 98 3e-21
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 98 3e-21
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 27 4.6
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 4.6
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 27 6.0
02_04_0381 - 22497519-22497769,22498157-22498247 27 6.0
09_06_0179 + 21380018-21380346,21380468-21380595,21380710-213808... 27 8.0
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 97.9 bits (233), Expect = 3e-21
Identities = 47/82 (57%), Positives = 56/82 (68%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY
Sbjct: 41 DKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAY 97
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG LD Y G
Sbjct: 98 CTGLLLARRVLKLRGLDQEYEG 119
Score = 53.6 bits (123), Expect = 6e-08
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -3
Query: 366 GFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRL 262
GFVK K Y KR+QVKFK+RR+GKTDY AR RL
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRL 37
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 97.9 bits (233), Expect = 3e-21
Identities = 47/82 (57%), Positives = 56/82 (68%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY
Sbjct: 41 DKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAY 97
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG LD Y G
Sbjct: 98 CTGLLLARRVLTLRGLDQEYEG 119
Score = 56.0 bits (129), Expect = 1e-08
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = -3
Query: 366 GFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRL 262
GFVK K YFKR+QVKFK+RR+GKTDY AR RL
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRL 37
>10_08_0429 +
17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +1
Query: 253 PNNEAFTSIIISFPFTTLLEFYLVPLEVLFVLHNFNE--SHILNLSYKVASTD 405
P N AF SI+ ++ L LV LE LH E H++ L+ + TD
Sbjct: 575 PRNAAFQSIVGPLSSSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTD 627
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 183 WXVTSLLERRTIRRYLGVLY 242
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 183 WXVTSLLERRTIRRYLGVLYL 245
W S LERR RRYL + Y+
Sbjct: 771 WKYVSKLERRETRRYLEMFYI 791
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 113 WCEGWSDKLCCGIFNWSAISTKTASK 36
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
>09_06_0179 +
21380018-21380346,21380468-21380595,21380710-21380853,
21380938-21381086,21381226-21381361,21381583-21381679,
21382056-21382156,21382354-21382466,21382865-21382936,
21382970-21383161,21383249-21383344,21383463-21383615
Length = 569
Score = 26.6 bits (56), Expect = 8.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 43 AVFVLIADQLNMPQHNLSDQPSHHNVATHVNKQRTQYGHLQSES 174
+VF +I+ N+P +++ +VA H + Q T G++ SES
Sbjct: 165 SVFNIISKLFNIPLLSITTSFVAEDVARHDSDQFTSEGNMSSES 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,476,913
Number of Sequences: 37544
Number of extensions: 223335
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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