Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00978
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)              70   3e-20
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          79   1e-15
SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)                    29   1.5  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   2.7  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    27   6.2  
SB_21441| Best HMM Match : zf-A20 (HMM E-Value=2.2)                    27   8.2  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 70.1 bits (164), Expect(2) = 3e-20
 Identities = 30/60 (50%), Positives = 42/60 (70%)
 Frame = -2

Query: 184 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXLDTLYTGT 5
           ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY TG            L  +YTGT
Sbjct: 95  RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGT 154



 Score = 45.2 bits (102), Expect(2) = 3e-20
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -2

Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQ 182
           DKNKYNTPKYR +VR++NKD+  Q
Sbjct: 35  DKNKYNTPKYRFVVRITNKDIICQ 58



 Score = 33.1 bits (72), Expect = 0.095
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -3

Query: 306 KRREGKTDYYARKRLVVRTR 247
           +R +GKTDYYARKRL+ + +
Sbjct: 17  RRSQGKTDYYARKRLITQDK 36


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 79.4 bits (187), Expect = 1e-15
 Identities = 36/59 (61%), Positives = 43/59 (72%)
 Frame = -2

Query: 181 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXLDTLYTGT 5
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY TG            L  +YTGT
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGT 59


>SB_2863| Best HMM Match : Asp (HMM E-Value=1.2e-07)
          Length = 721

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 301 TLLEFYLVPLEVLFVLHNFNESHILNLSYKVASTDG 408
           TL+EF ++  E  F L N     IL L+Y+  +TDG
Sbjct: 334 TLVEFAVIRNEKDFFLRNSINEGILGLAYRSLATDG 369


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 283 ISFPFTTLLEFYLVPLEVLFVLHNFNESHILNLSYK 390
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 172 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 74
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 366  GFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTRTN 241
            GF++ +K +    RY VK  + R    DY  R ++V   R N
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY--RVQVVSVKRVN 1129


>SB_21441| Best HMM Match : zf-A20 (HMM E-Value=2.2)
          Length = 308

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 70  LNMPQHNLSDQPSHHNVATHVNKQRT 147
           LN PQH L+  P H  V    ++Q T
Sbjct: 53  LNGPQHRLATDPQHRQVTGPQHRQAT 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,172
Number of Sequences: 59808
Number of extensions: 278360
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)