Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00978
(416 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 120 3e-27
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 120 3e-27
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 120 3e-27
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 120 3e-27
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 120 3e-27
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 120 3e-27
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 118 1e-26
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 110 2e-24
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 94 1e-19
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 120 bits (288), Expect = 3e-27
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 100 CTGLLLARRLLNRFGMDKIYEG 121
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 120 bits (288), Expect = 3e-27
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 100 CTGLLLARRLLNRFGMDKIYEG 121
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 120 bits (288), Expect = 3e-27
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 100 CTGLLLARRLLNRFGMDKIYEG 121
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 120 bits (288), Expect = 3e-27
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 100 CTGLLLARRLLNRFGMDKIYEG 121
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 120 bits (288), Expect = 3e-27
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 100 CTGLLLARRLLNRFGMDKIYEG 121
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 120 bits (288), Expect = 3e-27
Identities = 53/82 (64%), Positives = 64/82 (78%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY
Sbjct: 47 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAY 106
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 107 CTGLLLARRLLNRFGMDKIYEG 128
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 8 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 48
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 118 bits (283), Expect = 1e-26
Identities = 52/82 (63%), Positives = 63/82 (76%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCA Y+HELP+YGVKVGLTNYAAAY
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAY 99
Query: 73 STGXXXXXXXXXXXXLDTLYTG 8
TG +D +Y G
Sbjct: 100 CTGLLLARRLLNRFGMDKIYEG 121
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 110 bits (265), Expect = 2e-24
Identities = 47/59 (79%), Positives = 56/59 (94%)
Frame = -2
Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 77
DKNKYNTPKYR+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAA
Sbjct: 40 DKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAA 98
Score = 79.0 bits (186), Expect = 6e-15
Identities = 34/41 (82%), Positives = 39/41 (95%)
Frame = -3
Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
MGFVKVVKNK YFKRYQVKF++RREGKTDYYARKRLV++ +
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDK 41
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 94.3 bits (224), Expect = 1e-19
Identities = 42/71 (59%), Positives = 53/71 (74%)
Frame = -2
Query: 220 LIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXX 41
+IVR++N+D+ Q+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAAAY TG
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLL 60
Query: 40 XXXXLDTLYTG 8
+D +Y G
Sbjct: 61 NRFGMDKIYEG 71
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,095,521
Number of Sequences: 237096
Number of extensions: 1239198
Number of successful extensions: 2055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2055
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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