Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00978
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   118   2e-27
Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical pr...    30   0.78 
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   0.78 
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    30   0.78 
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    26   9.5  
U40945-4|AAA81722.2|  318|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    26   9.5  
AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical ...    26   9.5  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  118 bits (284), Expect = 2e-27
 Identities = 55/82 (67%), Positives = 64/82 (78%)
 Frame = -2

Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
           DKNKYNTPKYRLIVR++NKDV  Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY
Sbjct: 40  DKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAY 99

Query: 73  STGXXXXXXXXXXXXLDTLYTG 8
           +TG            LD+ Y G
Sbjct: 100 ATGLLLARRHLKTIGLDSTYKG 121



 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 31/41 (75%), Positives = 36/41 (87%)
 Frame = -3

Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLVVRTR 247
           MG VKV+KNK YFKRYQVK ++RREGKTDYYARKRL V+ +
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDK 41


>Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical
           protein T27C5.1 protein.
          Length = 352

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 250 CPNNEAF-TSIIISFPFTTLLEFYLVPLEVLFVL 348
           CP  E F TS+ I     TL+ + L+PL +LFVL
Sbjct: 187 CPTREFFTTSVFIVLTDKTLMSYILIPL-ILFVL 219


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 136  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 249
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 136  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 249
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 94  SDQPSHHNVATHVNKQRTQYGHLQSESRP 180
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 94  SDQPSHHNVATHVNKQRTQYGHLQSESRP 180
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 94  SDQPSHHNVATHVNKQRTQYGHLQSESRP 180
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 250 KNKYNTPKYRLIVRLSNKDVTXQVAYSRIEG 158
           K+K  TP YRL++ L + D+T  V  S I G
Sbjct: 187 KSKSRTPTYRLMLILGSLDLTGLVISSLIPG 217


>Z68220-5|CAA92490.2|  282|Caenorhabditis elegans Hypothetical
           protein T20D3.8 protein.
          Length = 282

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 199 KDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 65
           + +T  ++   I    I+ A +S     YGVK  + +Y  + STG
Sbjct: 127 RTLTTSISTDTIYSTSIITAIFSCFFHDYGVKAPVVSYPTSVSTG 171


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 348  KNKQYFKRYQVKFKKRREGKTDYYARKR 265
            KN+Q  K YQ++ ++ R+ K D  A  R
Sbjct: 1646 KNQQIIKEYQIECEEARQAKEDIAALLR 1673


>U40945-4|AAA81722.2|  318|Caenorhabditis elegans Hypothetical
           protein F10D7.4 protein.
          Length = 318

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 298 TTLLEFYLVPLEVLFVLHNFNESHILNLSY 387
           T    FY VP + L +L++ N+  ++ L+Y
Sbjct: 123 TEFFTFYHVPRDYLHLLYHGNDQQVVQLNY 152


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 301 TLLEFYLVPLEVLFVLHNFNESHILNLSY 387
           +LL  +L+ +  +FV  NF  SHI + SY
Sbjct: 160 SLLPIHLLGIFYVFVAFNFRPSHISDRSY 188


>AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical
           protein Y59C2A.2 protein.
          Length = 440

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 284 SVFPSRRFLNFTWYLLKYCLFFTTLTNPI 370
           S+F SR+FLNF +   K  +F    TNPI
Sbjct: 163 SIF-SRKFLNFQFLRKKKSVFLQFETNPI 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,851
Number of Sequences: 27780
Number of extensions: 204951
Number of successful extensions: 508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)