Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00978
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.79 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 208  DAQSDDI*VCYICSCPNNEAF 270
            D+  + +  CY+C  PN+E F
Sbjct: 1059 DSDRERLYDCYVCYSPNDEDF 1079


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 357 KVVKNKQYFKRYQVKFKKRREGKTD-YYARKRLVVRTRTN 241
           K  KN+  +++Y+   K+R   KT+   +++R ++ + +N
Sbjct: 286 KSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSN 325


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 109  HHNVATHVNKQRTQ 150
            HHNV  H    RTQ
Sbjct: 1680 HHNVNKHCTIHRTQ 1693


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 238 YICSCPNNEAFTSIIISFPFTTLLEFYLVPLE 333
           YI   PN     SI IS   +  +   L PL+
Sbjct: 139 YIRIFPNGSVLYSIRISLTLSCPMNLKLYPLD 170


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 238 YICSCPNNEAFTSIIISFPFTTLLEFYLVPLE 333
           YI   PN     SI IS   +  +   L PL+
Sbjct: 139 YIRIFPNGSVLYSIRISLTLSCPMNLKLYPLD 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,522
Number of Sequences: 438
Number of extensions: 2661
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)