Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00978
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...    96   1e-20
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...    96   1e-20
At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UD...    27   5.1  
At1g29570.1 68414.m03616 zinc finger protein-related contains si...    27   6.7  
At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP glucosyl...    26   8.9  
At4g10600.1 68417.m01734 PHD finger family protein contains Pfam...    26   8.9  
At1g09970.1 68414.m01123 leucine-rich repeat transmembrane prote...    26   8.9  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/82 (52%), Positives = 54/82 (65%)
 Frame = -2

Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
           DKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY
Sbjct: 40  DKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAY 99

Query: 73  STGXXXXXXXXXXXXLDTLYTG 8
            TG            +D  Y G
Sbjct: 100 CTGLLLARRVLKMLEMDDEYEG 121



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = -3

Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLV 259
           M FVK  K+  YFKRYQVKF++RR+GKTDY AR RL+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLI 37


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 43/82 (52%), Positives = 54/82 (65%)
 Frame = -2

Query: 253 DKNKYNTPKYRLIVRLSNKDVTXQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAY 74
           DKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAAY
Sbjct: 40  DKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAY 99

Query: 73  STGXXXXXXXXXXXXLDTLYTG 8
            TG            +D  Y G
Sbjct: 100 CTGLLLARRVLKMLEMDDEYEG 121



 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 25/37 (67%), Positives = 30/37 (81%)
 Frame = -3

Query: 369 MGFVKVVKNKQYFKRYQVKFKKRREGKTDYYARKRLV 259
           M FVK  K+  YFKRYQVKF++RR+GKTDY AR RL+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLI 37


>At4g02280.1 68417.m00309 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative strong similarity to
           sucrose synthase GI:6682841 from [Citrus unshiu]
          Length = 809

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 183 WXVTSLLERRTIRRYLGVLYL 245
           W   S LERR  RRYL + Y+
Sbjct: 773 WKYVSKLERRETRRYLEMFYI 793


>At1g29570.1 68414.m03616 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 321

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 67  QLNMPQHNLSDQPSHHNVATHVNKQRTQYGHLQSE 171
           Q N+ Q  L D P +HNV    N Q  +   ++ E
Sbjct: 244 QENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKE 278


>At5g49190.1 68418.m06088 sucrose synthase / sucrose-UDP
           glucosyltransferase (SUS2) nearly identical to SP|Q00917
           Sucrose synthase (EC 2.4.1.13) (Sucrose-UDP
           glucosyltransferase) {Arabidopsis thaliana} (SUS2);
           contains Pfam profile: PF00862 sucrose synthase
          Length = 807

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 177 ATWXVTSLLERRTIRRYLGVLY 242
           A W   S LERR  RRYL + Y
Sbjct: 768 AFWKHVSKLERRETRRYLEMFY 789


>At4g10600.1 68417.m01734 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 237

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 199 CWRDAQSDDI*VCYICSCPNNE 264
           C R  + DD+ VC+ C   NNE
Sbjct: 42  CSRYVKGDDLFVCHKCKIKNNE 63


>At1g09970.1 68414.m01123 leucine-rich repeat transmembrane protein
           kinase, putative Similar to A. thaliana receptor-like
           protein kinase (gb|RLK5_ARATH). ESTs
           gb|ATTS0475,gb|ATTS4362 come from this gene isoform
           contains a TG acceptor site at intron.
          Length = 976

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = -2

Query: 163 EGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTG 65
           E  H+V   Y +  P YG    +T     YS G
Sbjct: 838 ESTHVVAGTYGYIAPEYGYASKVTEKCDVYSFG 870


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,450
Number of Sequences: 28952
Number of extensions: 184979
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)